| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4534 |
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| Symbol | |
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| ID | 5191504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5059730 |
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| End bp | 5061001 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589009 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001269838 |
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| Protein GI | 148549736 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0836312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.746207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGA CCCGCAAGCG TACGGTGCGC CCGACCCTGC GCTCGGTGCT GGGCCGTGGT
CACCTTAGCG TCGCCTTGCT TGCTGTTGGC CTGGCGGGTA TCTCCCTCAC CCTGCTGGGC
GTGCTCGCCC TGCGTGTCTA TGCCAACCAT AACCTGCAGT TGATCGCCCG CTCGATCAAT
TACACGGTAG AGGCGGCGGT GGTGTTCGAT GACAGCGCCG CTGCCAATGA GTCGCTGGCG
TTGATTGCCA GTACCGAAGA AGTGGCCGAG GCCAAGGTCT TCAACAACGA GGGCGAGCAA
CTGGCGCACT GGCAACGCGA CAATACCGGC ATGCTCGCGC AGCTGGAGGT GCAGGTTGCC
AGCGCCTTGC TGGATGAGCC GGTCATTCTG CCGATCGTGC ACCAGCAACA GCAGGTCGGG
CACATCGAGC TGGCAGGCCA GGGCAGGAGC CTGTTGCTGT TCCTGCTCAG TGGCTTGGCC
GGTATCCTGT TCTGCACGGT CCTCAGCGCC TTGGCTGCCC AGTATCTGTC GCGGCGCCTG
CTCAGCGATA TCACCCGCCC GCTGCGCGGC CTGGCCAGTG TCGCCCATGC CGCCCGCCGC
GAGCGCAGCT TCGACCGGCG CGTACCAGAA GCGCCGATTG CCGAGCTGAA CGAGCTGGGT
AATGACTTCA ATGCTCTGCT GGATGAACTG GAGGTGTGGC ATAGCCACCT GCAGAGCGAA
AACCAGACCC TTGCCCATCA GGCCAGCCAC GATAGCCTGA CCGGCTTGCC CAACCGCGCC
TTCTTTGAAG GGCGCCTGAG CCGCAGCGTG CGGAATGCGG CGAGTCAGCA GGACCACCTG
GCACTGCTGT TCCTCGACAG CGACCACTTC AAGCAGATCA ACGACACCCT TGGCCACGCC
GTGGGTGACG AGGTGTTGAT CAGCGTGGCC GAACGTGTGC GCGCCCAACT GCGCGAGCAC
GATCTGGTGG CGCGCCTGGG GGGCGACGAG TTTGCCGTGC TGTTGACGCC TTTGCATACG
CGCAAGGACG CCGAACACAT TGCCGAGAAG ATCGTTGCCA GCATGAAGCT GCCGGTGCAA
CTGGACAGCG GCCGCAGTAT CTCCACCTCG CTGAGTGTCG GTATTGCCTA TTACCCGGAT
GACGGCGCTG ACCCCGCCAG TCTTCTCAAT GCCGCCGATG CGGCAATGTA CCAGGCCAAG
CGCGAACGCC GTGGCCATTG GCAACTGGCG CAGACGGAAC GGTCCGCCAA CGAAATCAGG
AACAGGAGTT GA
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| Protein sequence | MKPTRKRTVR PTLRSVLGRG HLSVALLAVG LAGISLTLLG VLALRVYANH NLQLIARSIN
YTVEAAVVFD DSAAANESLA LIASTEEVAE AKVFNNEGEQ LAHWQRDNTG MLAQLEVQVA
SALLDEPVIL PIVHQQQQVG HIELAGQGRS LLLFLLSGLA GILFCTVLSA LAAQYLSRRL
LSDITRPLRG LASVAHAARR ERSFDRRVPE APIAELNELG NDFNALLDEL EVWHSHLQSE
NQTLAHQASH DSLTGLPNRA FFEGRLSRSV RNAASQQDHL ALLFLDSDHF KQINDTLGHA
VGDEVLISVA ERVRAQLREH DLVARLGGDE FAVLLTPLHT RKDAEHIAEK IVASMKLPVQ
LDSGRSISTS LSVGIAYYPD DGADPASLLN AADAAMYQAK RERRGHWQLA QTERSANEIR
NRS
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