| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4348 |
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| Symbol | |
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| ID | 5193721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4864521 |
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| End bp | 4865396 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588825 |
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| Product | beta-ketoadipate pathway transcription regulator |
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| Protein accession | YP_001269655 |
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| Protein GI | 148549553 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.974938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0336257 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACG AAACCCTGGG CAACGATTCC GGCAATGCAG AGGTGGCGCG ACCTGCTTCG
GCTGCCATGG CGCCGCCGAT CGTGGCTTCC CCGGCCAAGC GCATCCAGGC CTTTACCGGT
GACCCGGACT TCATGACCTC GCTGGCACGT GGCCTGGCGG TGATCCAGGC ATTCCAGGAG
CGCAAGCGCC ACCTGACCAT CGCCCAGATC AGCCACCGTA CTGAAATCCC TCGCGCAGCG
GTGCGCCGTT GCCTGCACAC GTTGATCAAG CTGGGTTACG CCACCACCGA CGGGCGTACC
TATTCGCTGC TGCCTAAAGT GCTGACCCTG GGGCATGCTT ACCTGTCGTC GACGCCACTG
GCAATTTCTG CCCAGCCGTA CCTGGATCGC ATCAGCGACC AGTTGCATGA GGCGGCCAAC
ATGGCCACCC TCGAAGGCGA CGACATCCTT TATATAGCCC GTTCGGCCAC GGTCGAGCGG
CTGATTTCGG TCGATCTCTC GGTGGGGGGA CGCCTGCCGG CCTACTGCAC GTCGATGGGG
CGCATTCTGC TGGCGGCCAT GGACGACACC AGCCTGCGTG AGTATCTGGA ACGTGCTGAT
CTCAAAGCGC GCACCAGCCG CACCCTGAAT GATCCCGAAT CGTTGTTCGC CTGCATCCAG
CAGGTGCGCG CCCAAGGCTG GTGCGTGGTG GACCAGGAAC TGGAACAGGG GCTGCGATCG
ATTGCAGTGC CGGTGTATGA CGCTTCGGGG CAGGTGTTGG CTGCCTTGAA CGTAAGTACC
CATGTTGGGC GGGTGACCCG CAGTGAATTG GAGCAGCGGT TCTTGCCGAT TTTACTGGCA
GCCAGTCGAG ACCTTTGCCA TCAGTTGTTT GGTTGA
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| Protein sequence | MSDETLGNDS GNAEVARPAS AAMAPPIVAS PAKRIQAFTG DPDFMTSLAR GLAVIQAFQE
RKRHLTIAQI SHRTEIPRAA VRRCLHTLIK LGYATTDGRT YSLLPKVLTL GHAYLSSTPL
AISAQPYLDR ISDQLHEAAN MATLEGDDIL YIARSATVER LISVDLSVGG RLPAYCTSMG
RILLAAMDDT SLREYLERAD LKARTSRTLN DPESLFACIQ QVRAQGWCVV DQELEQGLRS
IAVPVYDASG QVLAALNVST HVGRVTRSEL EQRFLPILLA ASRDLCHQLF G
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