| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3939 |
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| Symbol | |
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| ID | 5190330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4439407 |
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| End bp | 4440837 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588412 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001269247 |
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| Protein GI | 148549145 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.703744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.187647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATATC CCAGCCTTTC CCATCACGGT GGTACCCGGG GTGTCACCGG GTCCTGTCAC
CAGCTGCACC TCGGCCCATC CACCAGTTTG CTGGTCGACT GCGGGCTGGA ACAGGGAAGT
GATGCGCCGC CCGGTGCAGC ATCCGCCCCC CTCGGTTTTG ATATCCAGGG TATTCAGGCC
CTGGTCATCA CCCATGTCCA TCTCGACCAT GTTGGGCGCA TCCCTGCGCT GCTGGCAGCG
GGTTACCGTG GCCCTATCCT GTGCAGCGAG CCCTCGGCCC GGTTGCTGCC GCTGGTACTG
GAAGACGCCT ACAAGCTGAG CATCAGCAGC GAGCCTGCGC AGGTGGCGCG CTATCTCGAC
TTCATCCGTG ACCTTATCGT GCCGCTGCCC TTTGAGCAGT GGCACACGGT GGTTGAGTAC
GCTGGTCTTG CCTGCCGTAT TCGCCTGCAG CGGGCAGGGC ATTTGCTGGG TTCCGCTTAT
GTCGAGTGTG ATATGCAGCA TGAGCACACC AACACCCGGT ATGTGTTTTC TGGTGACCTG
GGCGCTTGTG GCAATCCGCT GCTGCGCCCG GTGCAACCCC CGGAGCGTGC CGATGTGCTG
GTGCTGGAAA GCACCTACGG CGACCGCCTG CACCCACAGG CAGGCGACCG CCGTCAGCGG
CTGGAAAACG CCATCGACCG AGCCCTCGCC GACAAGGGCA CCCTCCTGAT TCCCGCATTC
AGTCTTGGTC GTACGCAGGA GCTGCTGTAC GAGCTGGAAG ACATTCTGCA CCGCAAAGCC
CTACTAAACA CTACCGGTCC GGCTCCGGAC GGTGAGCCGA TCGACTGGTC ACAGTTGCCC
ATCATCCTCG ATTCGCCCTT GGCTCAGCGC ATCACCCGCG TGTACCGGGA GCTGCACGAA
TACTGGAATG CAGAAGCCAG GGCGCGTGTT GCAGCAGGGC GTGATCCACT CGGCTTCAGC
CAACTGATCA GTGTGGACAC CCATGCCCGC CACCAGCAGG TGGTGAACTA CCTCAAGAGC
ACTGGGCGAC CGGCGATCGT GATTGCCGGC AATGGCATGT GTTCGGGTGG GCGCATCGTC
AATTACCTCA AGGCCATGCT GGGTGATCCG CGGCATGAGG TGATGTTTGT GGGGTATCAG
GCTAAGGGGA CGCCGGGGGC GGTGATACAG GCCAGCGAAG GGGCGGAAGG GTTTGTACAG
ATTGACCTGG ATGGAGATAT GCATGATGTG CGGGCGAAAG TCATATCGAT GCACGGCTAC
TCCGGGCATG CGGACCAAGG GGGCTTGGTA CGGTTTGCCA TGGGAGGCAG AACGCCGGCG
GGGAGGGTAT TGCTTGTGCA CGGAGACAGC AGTGCCAAGG AAGGATTGGC CAAGGCTCTG
AGGCGGCGGA TTGGCCAAAT GGGGTGTCGT GCGGAGGTCA TTGTCGCCTG A
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| Protein sequence | MEYPSLSHHG GTRGVTGSCH QLHLGPSTSL LVDCGLEQGS DAPPGAASAP LGFDIQGIQA
LVITHVHLDH VGRIPALLAA GYRGPILCSE PSARLLPLVL EDAYKLSISS EPAQVARYLD
FIRDLIVPLP FEQWHTVVEY AGLACRIRLQ RAGHLLGSAY VECDMQHEHT NTRYVFSGDL
GACGNPLLRP VQPPERADVL VLESTYGDRL HPQAGDRRQR LENAIDRALA DKGTLLIPAF
SLGRTQELLY ELEDILHRKA LLNTTGPAPD GEPIDWSQLP IILDSPLAQR ITRVYRELHE
YWNAEARARV AAGRDPLGFS QLISVDTHAR HQQVVNYLKS TGRPAIVIAG NGMCSGGRIV
NYLKAMLGDP RHEVMFVGYQ AKGTPGAVIQ ASEGAEGFVQ IDLDGDMHDV RAKVISMHGY
SGHADQGGLV RFAMGGRTPA GRVLLVHGDS SAKEGLAKAL RRRIGQMGCR AEVIVA
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