| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3906 |
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| Symbol | |
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| ID | 5195419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4386920 |
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| End bp | 4389424 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640588379 |
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| Product | capsule polysaccharide biosynthesis protein |
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| Protein accession | YP_001269214 |
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| Protein GI | 148549112 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4092] Predicted glycosyltransferase involved in capsule biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.175407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCG CAGCTGAGCA AACCAGTCCA ACTCTGACAG TGATAATCCC GCTACGCTTA
ACTGAACAGC GCATGGATTT GCTGGATCGT ATTAACTACT ACAAACTTGA TTCCGAGCTA
CCTGCCGGCG TCGACTTTAT AGTCATTGAT GACGGCTCTC CCGACAAGCT TTACCGAGAG
ATCGAAAAGC GGGCAAGTGA TATCACAACT GTCTACCGGA CTGGCGCGAA GCCATTCCAA
GACTTTAGTC TTGCCAGGGC TCGAAACTAC GCAGCTCAGC GAGCTAAAGG TCAGTTTTTG
ATGTTCCTTG ACGCTGACTT AATCCCCTAT CCAGGTTTCT TCAAAGATAT TCTGCGAGAG
ATCCAGGTAA CCGATCTGCA AAATCAAGTA GATCAATTCC TTATGCTTCC TGTGATCTAC
TTGACAGAGC TCGGTTTTGA CAAAATGCAG AATATGCAGC CTGATCTTTG GCGTGCATAC
TTCATCAACT CCATGCCAAA AGACAACGCC AGTGAAATTG AAAAGTTCTC CTCCGGAACT
TCCGTAGTAG TTCTTGATCG TCACTACTAC TTATCTCGCG GCGGCCAAGA TGAACAATTT
GAAGGCTGGG GTTTTGAAGA CTACGAATTT GCCACTCGAT TAATTCGAAA AGTTCGCAAG
TTCCCACTAC CGAGCAACTG GCTTTCAATG GCCGGCAACT TCATGAAAAT CTGCAAGTAC
GATGGGTGGA AAGCCACATA CCGCCTTTAC GGAGACTGGA TGGCCTCGAA AGGAATTTAC
ATGTTCCATT CGCCCCATCC AATTGAAGCC AAGTATCACC GTCGCAAAGA TATCAACCTT
CGCTACCTGC AACATCGCAT GTCGGAGTTT GTTAAAACTG GCATAGAGCA TGATCCACTG
CCTGCCTTAG AGCAAGGTAA AACCCTGCTT CTTCAGAAAA ATCCATTCAC CTGCCAGAGA
GAATTCGCCC CATATCTCGG CCAAGTCACC CATGTATCCA GAGATCATTT CGAGACAGCA
GAAGAGTTCG GTGACTATCT ACTCGAAAAC GAATTTGATC GAGTTGTATT CGGCAACCCT
TACAGCACCG ACAAGCTGAC TTCACTCTAT AAGTGGTGTA GAGAGAACGG CTTCCCCTAC
ATCGTTGCTG AGCGCGGCGC TCTGCCGGGA GCGGTTTATC ACGATCGCAA CGGCTTCTTG
AACGACAGCA ACAGTTACGA TGAATCGCTT TGGAATAAAC CACTTAGCCA AGCGGATCAC
GATATAACAG TCGCATATAT CGAAGAAATC AAAGAAGGCA AGGACAACCT TGAGAAGCAA
TCCGATCGGA TTGACACCTT TGTTTTACGT CAGCGGCTTG GCATCACTGC AAAGCATAAA
GTTCTCTTTG TTCCATTCCA ACAGCCTAAC GACACAGTAA TCCGCAATTT CGCTGGCCCG
ATTGGAAGCT ATGACAACTT CCATGCCAAG ATTTGCTCAC TGGTTGAAGA GCTCGGCCCA
GAATGGAAAA TTCTCTATAA GAAGCACCCT GTAGAGGACT CCCTCCCAGA GATCCCTGGC
GCTATCGCTG TGCATGACAT CAATATGCAT GACCTTATGG ACATCTGCCA TGCGGTTGCG
CTTATAAACT CCGGCACTGG CTTGTACGCC ATGATGTATG GCAAACCTCT CTATGTCTTC
GGTGACTCTT GGTATGCCGC TGATGGCCTA TGTGTTCCGG TGAAAGACCC CGACGAAGCC
GCGACCCTAA TCAAGAGTGG TTTTGAAGTC GACTACGAAA AAGTGCTGCG CTTTGTCAAC
TATCTTCGCT TTAGCTTTTA TTCGTTTGGC CAAATGGTTA CGCGCAGGGT GCGCTATGAG
GATGGCACTC CAATTACCGC GACCACCGAG ATCAATTACT ATGAGCTTCG CGGTTTCGCC
AAAAGTACAC GAAAACTGCA GAAAACTTTC TCTGTAATCC CCACAACCAG CCCAATGTTC
GACCGTTACA AAGGTGGTAC GGGCCAGGTA ATTCACGGCA CAACCGCACC GGCACCGGCT
AAAGCCACCG CAGTTGCCAC CAACAAGCCA GCGCAACCCA AACCAGCAGC GGTCGCAGCG
ACGCCTGCAC CTGCGCCTGC GCCTGCGCCC ATCCCGACAC CAATTACAGT GAGCATGCCA
GCGGCAGCAA ATGCTGATGA CACTACTGAC GAAGCAATGG AGTCACTGGG TTACAATGAT
CACGTGCGCC TCGGAGTTGA GCACTTTGCT CGCGGGGAGT TCAAAGAGGC TGCAGCACAG
CTTGATCGCG CAGTTGAACT AAATCCTGCA CACATTAAGA CACTTCGTAC CGCTGCTGAA
GCACATGTTT CTGCCGGGTC AAAGGAGACT GCGATTCTCT ACTTGAGCAC TGCATGCAAA
CTAGCACCAG ACAATAAGAA TCTGTCCAAG CGTCTTCGCT CGCTAACCGT ACCGGCCTGG
CGCAGACCGC TCACATCGAG CACACCGTTC CCAGTGACAA TGTAA
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| Protein sequence | MKIAAEQTSP TLTVIIPLRL TEQRMDLLDR INYYKLDSEL PAGVDFIVID DGSPDKLYRE
IEKRASDITT VYRTGAKPFQ DFSLARARNY AAQRAKGQFL MFLDADLIPY PGFFKDILRE
IQVTDLQNQV DQFLMLPVIY LTELGFDKMQ NMQPDLWRAY FINSMPKDNA SEIEKFSSGT
SVVVLDRHYY LSRGGQDEQF EGWGFEDYEF ATRLIRKVRK FPLPSNWLSM AGNFMKICKY
DGWKATYRLY GDWMASKGIY MFHSPHPIEA KYHRRKDINL RYLQHRMSEF VKTGIEHDPL
PALEQGKTLL LQKNPFTCQR EFAPYLGQVT HVSRDHFETA EEFGDYLLEN EFDRVVFGNP
YSTDKLTSLY KWCRENGFPY IVAERGALPG AVYHDRNGFL NDSNSYDESL WNKPLSQADH
DITVAYIEEI KEGKDNLEKQ SDRIDTFVLR QRLGITAKHK VLFVPFQQPN DTVIRNFAGP
IGSYDNFHAK ICSLVEELGP EWKILYKKHP VEDSLPEIPG AIAVHDINMH DLMDICHAVA
LINSGTGLYA MMYGKPLYVF GDSWYAADGL CVPVKDPDEA ATLIKSGFEV DYEKVLRFVN
YLRFSFYSFG QMVTRRVRYE DGTPITATTE INYYELRGFA KSTRKLQKTF SVIPTTSPMF
DRYKGGTGQV IHGTTAPAPA KATAVATNKP AQPKPAAVAA TPAPAPAPAP IPTPITVSMP
AAANADDTTD EAMESLGYND HVRLGVEHFA RGEFKEAAAQ LDRAVELNPA HIKTLRTAAE
AHVSAGSKET AILYLSTACK LAPDNKNLSK RLRSLTVPAW RRPLTSSTPF PVTM
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