| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3829 |
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| Symbol | |
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| ID | 5190673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4295234 |
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| End bp | 4299079 |
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| Gene Length | 3846 bp |
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| Protein Length | 1281 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640588296 |
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| Product | YD repeat-/RHS repeat-containing protein |
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| Protein accession | YP_001269137 |
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| Protein GI | 148549035 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.799516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACCC AATCCATCGT CCATTCCAAT GCTTTCAACT TCCTCAGCTT CGTGCAGGGT
GGCGTTGACC CGCGAACCGG GCAATACACA CTGGCGATTC AGTTACCCGA ACTGCCCGCC
AACGACCTCA ACGGCCCCAG CCTGCCGCTG CGGCTGTCCT ACAACCCGAT GAGCAAAGGG
GATCCAGGGT TCGGAGACGG CTGGAGCTTG AACCTGAGCC AATTCACGAA CCGTGGGATG
CTCAACCTGC ATTCTGGTGA AAGCTTCAAA GTGGACGACA ACGGTCCGGG TGAGCAGGCT
GTGGTGCTAG AGCGCAAAAT CGACAGCTTT CATTTTGAAA ATGTCAGTGA AGGTGAGCAA
ACGCGCTATC GCGTGGCGCA CAAGACCGGT TTGATCGAGC TGCTTGAGCC ACAGGCTCCC
AATTACACCG TGTCCTTGCC CGTGCGGGTG CTGGCAGAGA CAGGTCACGG CATCACCCTG
GGCTACACGC CTGTGGACGG TGCGCCCTGC CTGGAATGGA TCGTTGACGA CACCAACAGG
ACCTTGCTGA AAATCGACTA TTCCACCAGC GATGTGCTGA TCGACTTGAA CCCCGGGACC
AAAGCCTTCG CACGTTACAC CTTGGTACGC GACGGCGATG AACTGAAACA AGTCGTGTTA
CCCACCCCGG ACAAGGCACG CTGGGAATTC GACTATCATC CGTTGCAAAC TGAGTCGTGG
GGCATTTTGC GTTTGTTGAC CCATGTGCGA ACCCCGCTCG GTGGCAGCGA AGTCATCGAA
TACAAGTACG ATGGCCATGA CTTGCCTGGC GGGAAGACGC TACCGTACGT AACGCGCCAT
GTCGTGAGCC CAGGCTTTGA ACAGGAAGAT GTCGAAACAC ACTATGCTTT CAGCAGCAAC
AATTATCTAG GTAACGGCGC CGGCGTCGAT TGGGAGGATA ATGGCTTCGA CAACTTGTAC
AAGTTCACCG GGAGCGATTT TCTCTATACC TCGACGACAA GCCACTATAT GAACAAGGTT
GCGGTGCGCG TGGTGGAGCG CAGTTTCAAC CGCTTCCATT TAATAACCAA ACAGGTCACT
ACCCAGGACA CCTGCGTCAA TACCGTTACC ACCACCTATC ATGAGGTCGA TAATTTAGGA
TTCTCGGCAC AACCGAATAA CTTCCAGTTA CCCAAGACCG TGACAACCGC CTGGCGGCTG
GCAGGAAACT CAAACGCTTA CCGGGAGCAG ACGGTCACCA CTGACTATGA CCCATACGGC
AACCTGATAC TGGAGCGGCA GCCCAATGGT GTGACAACGC ACAGCACCTA TTACCCAGCG
GCCGCCGAGG GAGACTACCC CGGTGATCCA GAAGGCTTTG TCCGGTGGCT GAGATCGCGC
ACGGTGGAGC CCGCCGCCGA CGGCGATGCC GGAGCAGAAA CACTGCGTAG TGACTATACC
TACGTCAAAC TGTCCGCCCT CGACGCTGAT GCCAGGGGCA AGTTGCTTCA GCATACTGAA
GCACTGGTGC GAGTGCAGGG CGCCAAGCTG TTGCGCCATA CCCAGACTGA ATATGCAGAC
AGCGTTGGCG GTACGTGGCA TCGTGGCCTG GTGCGAGTGC GCCAGATCAA GGCATTGCGT
CATGGCCAGT CCAGGCTCGC GACCCCGCGC GACGATAAGT TGCAACATGG CCGGCCTGTC
AGTGAAACGC TGAAGCTGAA CGGCAAGGTT ACCCATACAA CCTATAATTA CACCCGGGTT
GAGGAGGACC AGCATCCCGC TGTGCAAACC GTGGCGACTC TGAACGGCTT CGACCATGGG
CATTATCTGC CAGGTACGGG CAAGCGTCAT GCGCAAAAAG TCACCACTTT GCGGCATTCG
GTGTTGATCG GTGAACCGCT GCTCCATTAT GACGAAAACT ATGAGAGCAA CGATGTGCAG
ATCGCTTATA CCTATGACGA GCTGCGACGC GTAACAAGCG AAACCGTTGC GCCGGGTACC
GAGTACACGG CGAAACGCGA GTACAGCTAC CATCTGTCGT CCAATGGCAG CCAGGCTCTG
CAGGTCATGG TAGACGTCAA GGGTGTTACC ACCTGGAGCT ATGTCGATGG CCTGAACCGC
GAAGTTCGGC GGATGCGCCA GGATCCCGAC TATGCGCTTA CGCCAGCAGC CCAGGAAGCG
CAGCGTCAGA CCTATAGTGC AACGTACGAT GCCCTGGGCA ACCTGGTTGA AGAGGTTGAA
CATGAGTGGC TGGCGCTGGA AGACCTGCCG CTGACCACCC GTTACGAGTA CGACGCCTGG
GGGCAGCGTT GCTGTGAGGT TGGGCCGGAT GGTGTGCGCA ACCATGAACA AACCGACCCG
ATCGGCACGC AAGAATCAGC AGGGCCGATC ATCACGCAGT GGCGTGAATC GGGGGATGGT
AAGGTGCGCA CTGGCAAGAC CGTGACATGG CAGAATCTGT TCGACAAGCC GGTGCGTGTC
GAGCGCTTGC GCCTTGATGG CAAACGGGAA AGCTTGCACC AGTATTTTTA TGACGGCCTG
GGCCGGACCT CTCGGGAGAT CGATGGCCGT CAAGCGCAAA CTGCCTTTGC CTACGATGAA
TTCGATCGAC TGCTCGTGCA TACCTTGGCC GATAACTCGC AGGTGGTGCG TGAGTATGCG
CCGCATAGCC ACGAAGACCT GCCGGTGCTG ATCAAAGTGT TGGAAACCGT TAGTGGGGTA
GTGGAGGAGC ATGTGTTGGG CGAACAGGCC TTTGACGGCC TGAACCGTAT GGTGGCGTCT
GTTACCGGTG GTCGTCGGCG CTTGATGGAA TATGCCCCGG GCATGCGCCA GCCGGAGTCA
GTGATTTCCC CCCGTGGCGA GCATATTGTT TACAAGTATG TGCCACAGGT AGGTGAAGAG
CCTTGGCAAA GGACCCTGGT TAACACCGAG GTGAATGCGG AATACGACTA CGACACAAAA
AATGCTCGGC TGCTCGGTTG CAAGGAAAAT GGTGATGAGC TTTCGCGAGA CTATTACAGT
ACCGGTCACC TGCGCTCGGA AACGCGTAGC CAGGGGGGTG GGGAACCGCT TCGCATGCAA
TACGTCCACA GCCTTGGCGG TCGCCTTTTG AGTTATACGG ATGTATTAGG AGGTGTTCAA
TCACACCGTT ACAACGCATT GGGCCAGCTC GAGGAAACCC GCCTGGGTAC ACTTGTCAGC
CGCTTCTACT ATGACGCACT GGGCCGCATC GAGTCCTACG TGACGGAAAC GGAGGAACCC
GACGGTAGTG TGCGTAGCCT GACAACTACC TTGGGCTACG ATGAGTTCGA ACGCGAGACA
TCCCGCATTT TTGATTTTGG CGACACGCAG CAGACGTTGA CCCAAACCTA CGACGCAGTG
GATGCCATCG CGACTAAAAC GCTTAGTGAG GGCGAGGGCA CGCCGGTGCT GCGCGAAGAA
AGCTACGTCT ATGACGAGCG AGGCCGGTTG ACCGACTACG AGTGTCAGGG TGAAGACGCC
TATGTGCCCG TAGACCCGTA TGGCAACAAG ATCCAGCTGC AGCGCTTCGA TATGGACGCA
CTGGATAACA TCACCCGAGT GCGCACCCTG TTCGAGGAAG GCATGATCGA TGCCCGTTAT
CATTTCGACA ACCCTTGGGA CCCCGCGCAA CTGACGGGCA TCACCATCAA TGGGCTTGAA
GATGAGCCGC GAATCATTGA GTTGGAATAC GATGCCGATG GCAACCTGAT ACTGGATGAG
GAGGGGCGTC AACTTGAATA TGATGGGTTA GGGCGTTTGC AGCGTGTCAA GCTGGCGTCC
GGTTCGGGTG GGGCTACCTA TGGTTACGAT GCGCTGGATC GGTTGGCGAT GCAGGATGTA
CTGTGA
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| Protein sequence | MTTQSIVHSN AFNFLSFVQG GVDPRTGQYT LAIQLPELPA NDLNGPSLPL RLSYNPMSKG
DPGFGDGWSL NLSQFTNRGM LNLHSGESFK VDDNGPGEQA VVLERKIDSF HFENVSEGEQ
TRYRVAHKTG LIELLEPQAP NYTVSLPVRV LAETGHGITL GYTPVDGAPC LEWIVDDTNR
TLLKIDYSTS DVLIDLNPGT KAFARYTLVR DGDELKQVVL PTPDKARWEF DYHPLQTESW
GILRLLTHVR TPLGGSEVIE YKYDGHDLPG GKTLPYVTRH VVSPGFEQED VETHYAFSSN
NYLGNGAGVD WEDNGFDNLY KFTGSDFLYT STTSHYMNKV AVRVVERSFN RFHLITKQVT
TQDTCVNTVT TTYHEVDNLG FSAQPNNFQL PKTVTTAWRL AGNSNAYREQ TVTTDYDPYG
NLILERQPNG VTTHSTYYPA AAEGDYPGDP EGFVRWLRSR TVEPAADGDA GAETLRSDYT
YVKLSALDAD ARGKLLQHTE ALVRVQGAKL LRHTQTEYAD SVGGTWHRGL VRVRQIKALR
HGQSRLATPR DDKLQHGRPV SETLKLNGKV THTTYNYTRV EEDQHPAVQT VATLNGFDHG
HYLPGTGKRH AQKVTTLRHS VLIGEPLLHY DENYESNDVQ IAYTYDELRR VTSETVAPGT
EYTAKREYSY HLSSNGSQAL QVMVDVKGVT TWSYVDGLNR EVRRMRQDPD YALTPAAQEA
QRQTYSATYD ALGNLVEEVE HEWLALEDLP LTTRYEYDAW GQRCCEVGPD GVRNHEQTDP
IGTQESAGPI ITQWRESGDG KVRTGKTVTW QNLFDKPVRV ERLRLDGKRE SLHQYFYDGL
GRTSREIDGR QAQTAFAYDE FDRLLVHTLA DNSQVVREYA PHSHEDLPVL IKVLETVSGV
VEEHVLGEQA FDGLNRMVAS VTGGRRRLME YAPGMRQPES VISPRGEHIV YKYVPQVGEE
PWQRTLVNTE VNAEYDYDTK NARLLGCKEN GDELSRDYYS TGHLRSETRS QGGGEPLRMQ
YVHSLGGRLL SYTDVLGGVQ SHRYNALGQL EETRLGTLVS RFYYDALGRI ESYVTETEEP
DGSVRSLTTT LGYDEFERET SRIFDFGDTQ QTLTQTYDAV DAIATKTLSE GEGTPVLREE
SYVYDERGRL TDYECQGEDA YVPVDPYGNK IQLQRFDMDA LDNITRVRTL FEEGMIDARY
HFDNPWDPAQ LTGITINGLE DEPRIIELEY DADGNLILDE EGRQLEYDGL GRLQRVKLAS
GSGGATYGYD ALDRLAMQDV L
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