| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3750 |
|---|
| Symbol | |
|---|
| ID | 5191844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4200318 |
|---|
| End bp | 4201511 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640588206 |
|---|
| Product | response regulator receiver modulated diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001269058 |
|---|
| Protein GI | 148548956 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGACCT TTAACATCCT GATCGTCGAA GACCACCCCT TCCAGCATAT GTACCTGCAA
CACTTGTTCA GCGAGCTTGG CAGCTTCAAC CTGGAAGCAG CCCGGGATGG CCAGGAAGCG
CTGGAGCGCC TGCGCCAGCG TGACTTCGAC CTGGTGCTGA CCGACCTGCT GATGCCCGGC
ATGGACGGTG TGCAATTCAT CCAGCACCTT GCCGGCCTGC GCCACAAGCC AGGCCTGGCG
ATCATGAGCG TGGCCTCGCG GCGCATGCTC ATGGCGGCGA GCCTGGTGGC CAAGAACCTC
GGCGTGGACG TGCTCGGGCT GATCTCCAAG CCGGTCGAAC CCGCCGCGCT GCGCAGCCTG
ATCGACCAAT TGCAGTTGCA CCATCAGGCA CCGGCCCAGG CGGCACCGGC CACGCCCGAG
TTCGATCGCC AGACCTTGGT CGATGCCTTG AACAACCGAG CTTTTCAGGC CTGGTTCCAA
CCCAAGAAGT CCTTGCACAA TGGTCGCATC GTCGCGGCAG AGGCCTTGGT GCGCTGGATG
CACCCGGAGC AAGGGGTGTT GCTGCCAGGC ACCTTCCTGC CAACGATCAA TGCCTTTGGC
CTGGAGGAAA GGCTGCTGTG GGTGATGCTC AAGCAAGCCA TGGATGCCCA GGCGCGCTGG
CGCGAACGGG GCTATGACAT CCCGGTTTCG ATCAACCTGC CGACTCACCT GCTGAATAGC
CATGACCTGG CCGACCGGCT GCTGGAATTC GTCCTGCACC ACCAAGGCGT GCCCGGCAAG
CTGTGCTTCG AGCTGATGGA ATGCTCCATT CCCGAAGAGC TGAGCAACTT CTATGCAGGC
GCCTGCCGCT TGCGCATGAA AGGTTTCGGC CTGTCCCAGG ACGACTTCGG CAAAGGCTAC
AGCTCGTACA TGAGCCTGGT CTCGACGCCC TTCACCGAAC TGAAGATAGA CCGGGCGCTG
GTGCAGCGTT GCGATGAAAG CGAGAGCCTG GCCTCGGCCT TGGCCAGCAT CGTTGCCCTG
GGTCGCAAGC TCGGGCTCAC CGTGGTCGCC GAAGGGGTCG AGACGCCTCA GGAGCTCGAA
ATGCTGCGCA AGGTCGACTG CAACCAGGTG CAGGGCTTTT TGATCTCCCA TGCCGTGTCG
GCGGAACAGT TCCAGCGCCT GCTGCACAAC GACGGTCCCC CGTCAGCCTA CTGA
|
|---|
| Protein sequence | MKTFNILIVE DHPFQHMYLQ HLFSELGSFN LEAARDGQEA LERLRQRDFD LVLTDLLMPG
MDGVQFIQHL AGLRHKPGLA IMSVASRRML MAASLVAKNL GVDVLGLISK PVEPAALRSL
IDQLQLHHQA PAQAAPATPE FDRQTLVDAL NNRAFQAWFQ PKKSLHNGRI VAAEALVRWM
HPEQGVLLPG TFLPTINAFG LEERLLWVML KQAMDAQARW RERGYDIPVS INLPTHLLNS
HDLADRLLEF VLHHQGVPGK LCFELMECSI PEELSNFYAG ACRLRMKGFG LSQDDFGKGY
SSYMSLVSTP FTELKIDRAL VQRCDESESL ASALASIVAL GRKLGLTVVA EGVETPQELE
MLRKVDCNQV QGFLISHAVS AEQFQRLLHN DGPPSAY
|
|---|
| |