| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3301 |
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| Symbol | |
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| ID | 5192913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3713574 |
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| End bp | 3717995 |
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| Gene Length | 4422 bp |
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| Protein Length | 1473 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640587748 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001268611 |
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| Protein GI | 148548509 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.330124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACA ATAGCCGTCA ACCATCGGCT GCGGTCGATA CCCTTGCCAT GGCACAAGCA
TGCCAGGACC ACTACATCGC ACAGCGGCTG CCGGCCTGGA TGAAGCGGCT GAGCATGGCC
GAATTCAGCC TGCTGAGCGA GGCGCTGGCT GAACTGTTGG CGTGCCGTGC AGGCTTGTCG
TCAGCGCTGG CGCGGCTAAG CAACCTGAAT GCATTTACCC AGCCCTTGCT GCAGCAAGCG
CTCGGTGCCC ACGGCGACCT TGACGTCGAT CGCCTGTACT TTCGCCAGTG GTACACCTTT
ACCTCGCCCA CGATCCATTA TGTAACCAGT CGGCTTCCGG TTGTCGGCAG CGATTACTAC
GACATCCCTC TGCTCGAGGC TGCTTTGAGC AATTTCACCG CAGAACAGCA GCGCGACCAG
CCACAGGGTA ATTGCCTGGT CGATGTGCGC GGCGCAAGGC GTAGTGAGCT GTCTGCACCG
AGCTTCGCCA GGCTGTGTCG AGCGCTGGAT CTTGGGCAGA AATACCAGGC GCATCTGGAT
TCGGTACTTC AGCCCGAAGT CAGGGGATTG CTGACGCGAC GGCAACGCTA CAGCATGCTG
GTGGATGCCC TGCAGGCCAG GGCGCAGGGC GTATTGAGCG CAGACGAACT GCAGTGGGTG
GTGGCGCTCT GCACCAAGGA CACGCTCGGC AAGCTCGAAG GCGCCTCGGT TCGCGTGCGG
CAGTTGGCGG TGTTCGGTTG CCGCTTGCAG CAGATCGTCG TGCTGGACGT GATCGACGCG
GGCCTGTTGT TCAACACCAG CAAGCGCGTG TTGGTCTATG TACCGGGTGA CCCGCACGGC
CCCTGGAGCG TGCGCAGCGA CCTGGAAGAT TATGCCCGCC GGGTGCTTGG CAAACGCCTG
CGCGAAGATG ACTACCGGCG CTTCTTCAAC CGCTTCGTGC GCCGACGCGA TAGCCAGCGA
TTCTTCTCGG CCGTCAGTGA GCGCCTCGAT GATGTGCCCG GCTGGGCAAC CCGCGACCTC
GATGAGCAGA CCTTTGCCTA TCGCCTGCCA TTGTTCGAAC ACCTTGCTGA CGACTGGATT
GCGCGAATCA AGGACGATGC TGCGGTCATC GCCCCGCCCG TGGCCTTGCT TGATCGCGAG
GTCCAGGCCG AACACGCCCG CCGTTTGCGT GCTGAAGGCT GGACCCTGTT GGGTGTTGCA
GGGTTTTTCG TTCCGGGCAT CGGCGCGGTG TTGTTGGGGG TGATGGCCTG GGAGCTGCTT
GAGCAGACGT TCCAGGCTGT AGGGGATTGG CAGGACAACG AACGCAATGC GGCACTGGCG
CACCTGCTGA ATGTAGGCAA AGGACTGCTG GCTGTCGGGG CAACCGTTGC CGTAGTCGCC
ACGGCCCGAC GCGCCTGGAG TGTGGTGGAC AACCTGGTAC CGGCGCAGCT GGAAAACGGT
GAGGAAAAAC TGTGGAACGC AGACCTCGGC CCCTATCGCT GCGAAAGCCC GCCAGACATG
GCGGTGCCGG ACATGGAGGG TATGCACCGC CTGGGCGAGC GCCGCTGGAT CAGCATGGAC
GGGCACTGGT ATGAGATGAC CTGGCACAAC GACGATGAAC AGTGGCAACT GCTCCCTTAT
CAGGGCTATG CGCCGCCACT GCGTCACAAT GGGGCCGGTG CATGGCGGCT GTGGTACGAG
CAGCCCGCCG AGTGGGGCGA CACACGCCAG TTGTTCCGCC GCCTGGGCGG GCCATTCAGC
GACCTTGACG ATGCGCAGAT CGACCAGTCG CTGGCGATCC ATGGCCTCGA TGATCAGCAC
CTTCGGGCAT GGCATGTGTA TGGCCTTGCG CCGGAAGCAG CGCTGGTCGA CACCGTCGCA
CGCGTGCGGC TCGCCGGCAG GATTGGGACG TTGATCAACC ACTTGCGCGA GGGAGGGGTA
ACGGCAGACC CGCTGCTGCT GGAGCAGGTC ATGCGCCTTC CACAGGCCGC CGGCAAGGAC
GGAGCAGCGT TGGCCGATGT GGCTTGGGCC GGGCGACGAG CACTGCTGCA GGCGGTGTAC
GAAGAGCAGA ATCCCGACAC GGAAACGGGC CGTCTCTTAC GGCAGAATTT TGCCAGCCTG
CACCGCCTGG CTGCGGATGA GGTGCTACGC GATGCCAGCG AGGATGACCT GCAGCTTTTG
CGTGAGACGG GGCGCGTGCC GTTGCCGATG GCCGAGGCAG CAAGGTTGCA GGTTGCGCGG
ATTCGAATAG CGCGGGTGTA TGAGGCGCTG AGCATCGATA CGCCGCAAAA CCTCGACCTG
GCGCGTGTGG TACTTAATCT GCTGGTGCAT GTGCCGGGGG CTGGCGGGCC CGGGTGGCGA
TTGTACGACG GTGATGCCAG CGAGCCGTTA GTGACGGTCG AGGGATCGGG GCAGACGTTT
GACTTGCTTC ATCGTCATGG GCTGTTCCGC CTGCGTACCC GAACGCACAC GGTTGCCGGT
GAGAGGGGGG AGTTGTTCGA GACCTTGGCC GCAGCCTATG ACGACGCATC GCAAGCGGCC
ATCGGCCAAG GCCGGTCGTT TGTGCCTGCG CTGCGCCAGG CGCTGACCGA CGTTGCTATC
GAGCAACGCC AGACCGTGGT GAATCTGCTC AGGCTGGAAC AGCCGACCGG CTCGTTTCTC
CCGCCACAAC GTCTGGCTGA TGGCAGGGTT GGCTACCCCT TGGCGGGCGG CAGGTTCTGG
GGGGCGCTGG GGCGGAACAG GCCTAGGGCG CTTCAGGCTC GGCTGCGTGA TCTGTACCCA
GCTTTCAGTG ACGAGCAGAT TGGGCACTGG CTCGCATCAG GCGACGCGCA GGCCAGGTTA
CATAGGCTGG AACAGCAATA CGGGGTGCTC AAGAGGCACT TGACCCAGTG GGCGCGCAGT
GCCTTGCTGT CATCAGAACT GCCCGCCCGG CGTGAGTTCA GAAAGGGGCT GATCAACTGC
TGGCGCTGTC TTGTGCCGGA ACTGCAAGGA CAAGCAGCAC TGGACGACGG GCGCTTCATG
CTGACCCAGA CCATCAGCCG CTTGGGCCAC CTGCCGGCCC TGCCCGCGCA AGTGGGCTTT
CCCCACGTTT CGATCCTGGC CTTGCGCGCC ATGCGCGTGG AGCACGTTCC GGATGAGTTT
CTGCGGGCGT TTCCCAACTT GCGCAACCTG GAAATCACCC ATTGCCGACT CACGCGTTTG
CCATTGCCGC TGATGCTTGT CCAGAAACTG GAGGTGCTCG ACTTGTCTGG TAACCAGATC
GCCCTCGACC AAGGCCAGGC GTTGGTCCTG GCGGATTGCC GGTCCCTGGT GTACCTGAAC
CTTTCAGACA ACCCGCTGCG CAGGGCATTT TCCGTCCAGG CAATGACGGA GCTGAATGCC
CTCTACCTGT CGAACACCCA GTTGCCCGAG TGCCCCTACG GGCTGATGGA CGCGCCAGAA
CTGCATACCC TGAACCTCAG CGGCAACCGT ATTTCTGAAC TGCCCGAGGG TTTTCATCAG
TCGCAGCTGT GGCGCTTGGG CAGGGTCGAG CTTTCCGGCA ATCGGCTGGG GGGGGCGCAG
GTTGGGTTAT CAAACTGGCA TTTGCTTGAG GCCAGTCGCG TGCCTTACCG GTTGCGCATT
CTGGATGCGC TGCCTGGCGA ACGTCGAGAT GAAATGGCTG CACTGTGGGC CCATCTGGAG
GCCGAGGAAC AATCGGAAGC GTTCTTCAAT ACCCTGTCGA TGCTGACGGA ATCGGGCGCC
TTCAGCTTCT CATCGACTGC ATCCGCGCTC GCGGCCCGTG TGTTCGACAT GTTCCAGGCG
ATGTCTGAGC ATGATGCCCT CAGGCAGGAG CTGTTCGAGC ACGCTGCGGC GACCGGTTGC
CAGGATAACG CCACCGCGCG TTTCGCCAAC CTGGAACTGC GAGTGATGAT ATGGCGCACG
AGGCACAGCG GATCTGCCCG GCCTGAACGG GCCTTGCTGA AGCTCGGTGC CCGGATGTGG
CGGTTGGCGG TGCTTGAGCA AATTGCCGCT GAACATGCTC ATCGGGTGGG GGCGAGCGCT
GAATCGATCG AATTCGCCTT GGCCTATCGA ATCGGTTTGC GCACGTCTCT GGACTTGCCT
GGCCAACCCG ATGAAATGCT CTATGCAGGT ATCCCTGCCT TGAGTAGCCA GGACCTTCTC
CTGGCCCGTG AAAGGGTTCT GGCGCGACAG ACCCGGGAGG GCATTGCTGA TTACCTGTCA
CGCCAGTGGT TCTGGCAGGA TTACTTGCGC AAGGCCTGCT CGGTTCGCTT GCAAGTGCCC
CAATCCATGC ACGCTGAGCT GGAACGGCTG ATGGCGCTGG GGAATCGGGA CGAGGAAATC
GCGCGGCTGC AGATCCGCAA TCAGCAACGC GAGCATGCGG TGTTGCTGCA GTTGACGCTG
GAGGCGCTGG ACCGGAATAC GGTGCAGCGT CCGCTCAGCT AG
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| Protein sequence | MQNNSRQPSA AVDTLAMAQA CQDHYIAQRL PAWMKRLSMA EFSLLSEALA ELLACRAGLS
SALARLSNLN AFTQPLLQQA LGAHGDLDVD RLYFRQWYTF TSPTIHYVTS RLPVVGSDYY
DIPLLEAALS NFTAEQQRDQ PQGNCLVDVR GARRSELSAP SFARLCRALD LGQKYQAHLD
SVLQPEVRGL LTRRQRYSML VDALQARAQG VLSADELQWV VALCTKDTLG KLEGASVRVR
QLAVFGCRLQ QIVVLDVIDA GLLFNTSKRV LVYVPGDPHG PWSVRSDLED YARRVLGKRL
REDDYRRFFN RFVRRRDSQR FFSAVSERLD DVPGWATRDL DEQTFAYRLP LFEHLADDWI
ARIKDDAAVI APPVALLDRE VQAEHARRLR AEGWTLLGVA GFFVPGIGAV LLGVMAWELL
EQTFQAVGDW QDNERNAALA HLLNVGKGLL AVGATVAVVA TARRAWSVVD NLVPAQLENG
EEKLWNADLG PYRCESPPDM AVPDMEGMHR LGERRWISMD GHWYEMTWHN DDEQWQLLPY
QGYAPPLRHN GAGAWRLWYE QPAEWGDTRQ LFRRLGGPFS DLDDAQIDQS LAIHGLDDQH
LRAWHVYGLA PEAALVDTVA RVRLAGRIGT LINHLREGGV TADPLLLEQV MRLPQAAGKD
GAALADVAWA GRRALLQAVY EEQNPDTETG RLLRQNFASL HRLAADEVLR DASEDDLQLL
RETGRVPLPM AEAARLQVAR IRIARVYEAL SIDTPQNLDL ARVVLNLLVH VPGAGGPGWR
LYDGDASEPL VTVEGSGQTF DLLHRHGLFR LRTRTHTVAG ERGELFETLA AAYDDASQAA
IGQGRSFVPA LRQALTDVAI EQRQTVVNLL RLEQPTGSFL PPQRLADGRV GYPLAGGRFW
GALGRNRPRA LQARLRDLYP AFSDEQIGHW LASGDAQARL HRLEQQYGVL KRHLTQWARS
ALLSSELPAR REFRKGLINC WRCLVPELQG QAALDDGRFM LTQTISRLGH LPALPAQVGF
PHVSILALRA MRVEHVPDEF LRAFPNLRNL EITHCRLTRL PLPLMLVQKL EVLDLSGNQI
ALDQGQALVL ADCRSLVYLN LSDNPLRRAF SVQAMTELNA LYLSNTQLPE CPYGLMDAPE
LHTLNLSGNR ISELPEGFHQ SQLWRLGRVE LSGNRLGGAQ VGLSNWHLLE ASRVPYRLRI
LDALPGERRD EMAALWAHLE AEEQSEAFFN TLSMLTESGA FSFSSTASAL AARVFDMFQA
MSEHDALRQE LFEHAAATGC QDNATARFAN LELRVMIWRT RHSGSARPER ALLKLGARMW
RLAVLEQIAA EHAHRVGASA ESIEFALAYR IGLRTSLDLP GQPDEMLYAG IPALSSQDLL
LARERVLARQ TREGIADYLS RQWFWQDYLR KACSVRLQVP QSMHAELERL MALGNRDEEI
ARLQIRNQQR EHAVLLQLTL EALDRNTVQR PLS
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