| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3282 |
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| Symbol | |
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| ID | 5193934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3690224 |
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| End bp | 3691795 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587729 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001268592 |
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| Protein GI | 148548490 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.151406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACATACA CCAAGCATGG ATTGCGCCTG GATCTACGTA CACTCATTCT GGTGCTCTGC
GCCCTTACCG CAGTGGTCAT GCTGTGCGCC AGCTATTTCG CCAGCTACAG GGTGCAGCGC
CAGCTATTGA TCGACAATGC CCTGGAAGCC AACCGGGTGT ATGCGACAAA ACTGGCCAGC
ATCACCGAAA CCTTCATAGG CAACGCCTTG CAGCAACTGA TGTTCAGCGC CAGCGTACAA
AGCCGGCAGT TGAGCGATGC CGCTGCGCTG CAGGTGGAAA GCGACCGCCT ACTGGGCCAG
AGCATGGCCT TCAACTCCAC CTTCGTGATC GATGCCAACG GTGTACTGCT GGCAGTATCT
CCCGCCCCGC TACGCCACTT GGTCGGCACC CACGTGCAGT CACCCGGCGC TCTGGAAGCC
CTGCAGGAAC GCCGTCCGCT GGTTTCCACG CCCTACCTGT CGGCGGCCGA CAACCTGGTG
GTGGCGCTGT CGCAACCCAT TTTCGACCGC AACGGCCGCT ACCTGGGGTA TGTGGGTGGC
AGCCTGTACC TGCGTGAACG CAACATCCTC AACAGCCTGC TGGGCGAGCA TTTCTACAAG
GACGGTTCGT ACCTGTATGT GGTCGACCGC AACCGACGCC TGCTGTACCA CCCCCATAGC
GAGCGGGTAG GCACGGTGGT GGAGGGCAAT GCGCTGGTCG ACCAGTTGGC GACACTGGAC
AGCGGTACCC GGCAGCTGAC CAATAGCCTG GGCGTGGAAA TGCTCGCAGG CTTCGCCACC
GTCCCCAGCG CCGGCTGGGG CGTGGTAGCG CAGCAACCAT TGGCGCAGAC GGTGGCGCCG
TTGCACCATC TGGTGCTGAA CGTGATCGCC AGTTCGGCGC CCTTGGCGCT GGTTGGCAGC
CTGCTGCTGT GGTGGCTGGC CCGTACAATC GCCCGCCCGC TGTGGAAACT CGCCGCCGGT
GCCCGCACGA TGGACCGCGC CGCTACCGCC GAGCACTTGC ATCAGGTGCG GGCCTGGTAC
TTCGAGGCGG CAGAGCTCAA GCGGGCGTTA CTGTTCAGCC TGAACTTGCT GCAAGAGCGC
ATCGGCCGGC TCAATCGGGA CGCCCAGACC GATCCGCTGA CCGGCCTGGG CAACCGCCGC
AGCCTGGAAA TCAGCCTGTC GTTACTGGAG GCTGAAAACC GGGAGTTTGC AGCCATTGCG
CTAGATATCG ACCACTTCAA GCGGATAAAT GACAGCCATG GACACGAAGT GGGCGACCAG
GTGCTGCGCC AGCTGGCGGA GCTCATGCGC CGTTGTTGCC GCGAGGGCGA CCTGCTGTGT
CGCACCGGTG GCGAGGAGTT CCTGATATTG CTGCCTGGGG CCACCCTGAA CGTGGCGGCC
GCGGTGGCCG AACGGTTGCG TGTGACCGTA CAGGATATGC CGGTGGAACC GGTGGGGGCA
GTGACGATTT CGCTGGGGGT GACGCACTGG GATGGCGAGA CTCACGGCGA GCCCATGAAC
GCATTGGGCG AGGCTGACCG GGCGCTTTAC CGGGCCAAGC AGGAGGGGCG CAACCGGGTC
GCTTTTGCCT GA
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| Protein sequence | MTYTKHGLRL DLRTLILVLC ALTAVVMLCA SYFASYRVQR QLLIDNALEA NRVYATKLAS
ITETFIGNAL QQLMFSASVQ SRQLSDAAAL QVESDRLLGQ SMAFNSTFVI DANGVLLAVS
PAPLRHLVGT HVQSPGALEA LQERRPLVST PYLSAADNLV VALSQPIFDR NGRYLGYVGG
SLYLRERNIL NSLLGEHFYK DGSYLYVVDR NRRLLYHPHS ERVGTVVEGN ALVDQLATLD
SGTRQLTNSL GVEMLAGFAT VPSAGWGVVA QQPLAQTVAP LHHLVLNVIA SSAPLALVGS
LLLWWLARTI ARPLWKLAAG ARTMDRAATA EHLHQVRAWY FEAAELKRAL LFSLNLLQER
IGRLNRDAQT DPLTGLGNRR SLEISLSLLE AENREFAAIA LDIDHFKRIN DSHGHEVGDQ
VLRQLAELMR RCCREGDLLC RTGGEEFLIL LPGATLNVAA AVAERLRVTV QDMPVEPVGA
VTISLGVTHW DGETHGEPMN ALGEADRALY RAKQEGRNRV AFA
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