| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3217 |
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| Symbol | |
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| ID | 5191655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3629390 |
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| End bp | 3630427 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640587661 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001268527 |
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| Protein GI | 148548425 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2203] FOG: GAF domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.201545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0694192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCTT GTCCCCTACC CGCTGATGAA GCACTTCGTC AGCGCACACT TGATGACATG
GACTTGGTCG ATACGCCGGC CGAGCATTAT CTTGATACCT TGGTACGACT CACCCAAGCA
CTAGCCCAGG TGGAGACCGT TCTGATCAGC CTAATCGATC AGGATCGGCA GTGGTTCAAG
GCTCGAATCG GCATCGAGGT AAGCGAGACG AAGCGCAATG TGTCCTTTTG CGGCTACACG
ATTCTCGGTG AAGATACCTT GATGGTTTCC GACGCCAGGT GCGATTCACG CTTCGAGGAC
AATCCCCTAG TGCTGAACCC ACCCTATATC CGGTTCTATG CGGGCCACCC GTTACGTGCC
TCAAATGGCA AAGCCATTGG CACCCTGTGC ATGTTCGATC CTCGGCCGCG GAAGCTCAGC
GAGGCACAAC AGGCTCATTT TCGGGACTTA GCCACGCTCA CCGAGGGTTA TTTGCAACTG
CGGAGCCTAG CGCAGGTCAA TCGCGCTCTG CGTGTTGAAA TGGATCGCGG GCAGCGCAGG
GCTTTGCTTG ATCCTTTGAC ACAACTATGG AACCGCGGGG CGTTGGCAGC ATTTCAGAAC
CGAGAGCTTC GTTTGGCTGA GGAGCGAGGT TTACAGCTAG GTGCCGTATA CGCGGACCTC
GACCGTTTCA AATCCGTCAA TGACGAGCAT GGCCACGATG CCGGCGATAA AGTGCTCTGC
GAGTGTGCCC GCCGACTGCG GGCTACGCTG CGGCCAGATG ACCTGCTGGT ACGCCAGGGA
GGAGAGGAGT TTGTGGCCCT GCTACGGGTT AAAGATAGCC AAGAATTAAC GCAGATTGCG
GAGCGCTTGC GTCAGTCAAT CGGCAGCACG CCGTTTTTGA TGCCCGGCGG CCCCCGGAAG
ATGACCATGA GCATTGGATG CACCCTGCTC ACCCAGGGTG AGCAGATTGA TGATGCAATA
AAGCGCGCTG ACGGCGGTCT CTATGCGGCC AAACATGGGG GGCGTGACCA AGTTGTCTAT
GTGCCAGCGT TATCCTGA
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| Protein sequence | MPACPLPADE ALRQRTLDDM DLVDTPAEHY LDTLVRLTQA LAQVETVLIS LIDQDRQWFK
ARIGIEVSET KRNVSFCGYT ILGEDTLMVS DARCDSRFED NPLVLNPPYI RFYAGHPLRA
SNGKAIGTLC MFDPRPRKLS EAQQAHFRDL ATLTEGYLQL RSLAQVNRAL RVEMDRGQRR
ALLDPLTQLW NRGALAAFQN RELRLAEERG LQLGAVYADL DRFKSVNDEH GHDAGDKVLC
ECARRLRATL RPDDLLVRQG GEEFVALLRV KDSQELTQIA ERLRQSIGST PFLMPGGPRK
MTMSIGCTLL TQGEQIDDAI KRADGGLYAA KHGGRDQVVY VPALS
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