| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3215 |
|---|
| Symbol | |
|---|
| ID | 5194438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3627776 |
|---|
| End bp | 3628492 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640587659 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001268525 |
|---|
| Protein GI | 148548423 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000415229 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0198269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGA TGATCGTAGG CGCCGGCAGA GGTTTGGGCC GGGCTTTGCT CGAAGGGCTC
GGCAAGCCAG GGGACACGCT GATCGGCGTA TCACGCAAAC AGCCGTCAGA CTTGGCCCTT
GCCCCGGGCA TCGATCTGCA GTGGGTCGAT GCCGACCTTG CCAAGCCAAC GGCGGCTGTG
GCACAGATCG CGGATCGGGC ACCTGCCGAT CTGGATGTCC TGATCTACAA CGTTGGCATC
TGGGAAGAAC ACGCCTTCAG CGAGCACTAT GCCTTCCTTG ACGACAGCGA CGAATCGATC
ACCAGGCTGG TCGAGGTGAA CATCACGGCC ACGCTGCTTT TGCTCAAGCG CCTGGTGCCC
AAGTTGCTTG GTGCGCCCCG GCCGCAGTTG ATCCTCACCG GTTCGACCTC AGCTCTTCGC
CAGAGTGGGC GCCCGGAGGT AGCGTTCGGC GCCTCAAAGT TCGCCCTCAA CGGCATGGCT
GATGCGCTGC GCGAAGGTTT CAGGGGTGAC AACCTGGCGG TGACCGTGCT TCACCTGGGG
TATCTGAATA CCGACGACTC CCTGAACACG CCATTGGCAC AAGCCGCAGC ACGTGGCGAG
CGGCGCCAGG TACCGGTGCA TGATGTGGTC ACTATGGTCG ACGCGCTGTT GCGCTTGTCC
GGGGCTTCGT TCGTACGGGA GCTGATCTTG CCGGCTATCG GTGATGAGCG CTTCTGA
|
|---|
| Protein sequence | MKMMIVGAGR GLGRALLEGL GKPGDTLIGV SRKQPSDLAL APGIDLQWVD ADLAKPTAAV
AQIADRAPAD LDVLIYNVGI WEEHAFSEHY AFLDDSDESI TRLVEVNITA TLLLLKRLVP
KLLGAPRPQL ILTGSTSALR QSGRPEVAFG ASKFALNGMA DALREGFRGD NLAVTVLHLG
YLNTDDSLNT PLAQAAARGE RRQVPVHDVV TMVDALLRLS GASFVRELIL PAIGDERF
|
|---|
| |