| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3149 |
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| Symbol | |
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| ID | 5193588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3543666 |
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| End bp | 3548708 |
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| Gene Length | 5043 bp |
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| Protein Length | 1680 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640587595 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001268461 |
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| Protein GI | 148548359 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.20756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTGCC TCACCCTCTC GCAGATGCTC CCTCGCTGCC AGCCCCCCAC CGACCCGCGC
ATACGCAGGA CCGACCGCTG CCAACAACTA TCTACCGCAC CCCGGCGCCT TGATCAGCGT
GGACTGTCTC CCCCCACAAA AGAGATGGTG ACCATGACAA CCCCGACACC GTTGCATCAA
AACCAGATAA CCCGATCGTT ACCGAAATGG AGCAAGGCGC TCCAACCCAC GCATACGCGC
AAAGTGGTGC AGAGCCTGTA CAAGGAGTAC CTCGATGAAG ATGGCACCCC TTACTCGTGG
TATGCCACTG CCGATGGGCC AATGCGTGAG CAGTTGCACA ACGCGTTGCA AACCCGTAAC
AAACGGCTGG CGCAGGTCAA GCAGGCGCTA GGCGAGTTCA AGGACATCAT CGCGTTCTGC
GGCCCTCTGT TGACCGAGCG GTTGAAGCTG AATGTACCCG TAGACAGGGC GCAGTATGTG
TTCCAGCCCT TTGAGTCAGA GGCCAACATC TGGGTTGGCG TTCCCGATGT GGAAACGCCT
TTGGTCCCGG ACGTGGAAGC GGACGTGCTG GCCACCCGCC CCGTCGGCCA GCCGCAAACA
CGCAGTTTGC TGGAGGCTGC CCTGCACAAC TTCGAGGGGC TGGACGAAGT CGGTCCTTAC
AGCAGGCTCA CCAACGCCGC TGGCAGCGAC ACGCCCCTGG CAGGCCTGAC GATGGCGGAC
TTCGTCAGAC ATTGTCGGGC ACTGGACCTT GGCAAACGCT ATCAAGACCA TTTGCTTGCA
ACCCATGAAG GCGCCAATCG CGCTGAAATC CAGCGCCTGT CAATTGCAGC GAACCGTGAG
GCCTTGAGGG TCCAGGCATT GATCGCCAAG CTCAAAGGCC TGCTGAGCGA GGCCGGGCTC
GATGCGCTTG GGCAACTGTG CGACGGCAAG CCTCACCCCA CCTATGAAAA CGAGGCGTTG
CATTGCTGGC ACTTCAACCT GTTCGATACC CCCGTCCACG AAATACTGTT CATCGGGCCA
GACAACCCTT ACCGCAAGAA CCCCTGCATT GTGTATATCC CTGGCGACAG CGAGCACCCG
GTAAGAGAGT TCGCTTCTCG TCAGGAAGCG GGCAAGCACC TGCGCAGCCG GCTATTGCAA
AGCGAGTTTC GCCGCGCTTT GGTGCATTTC GCCTACAAGG ACAGGCAAAA AGAACTCGCC
CTAAAGCTGG AAATCGCGCT GTTCGAAGAG GATGAAGCGG GCATACGCAA ACCCCGCATC
ATGCCAGTGA TCCCTTTTAC GCTCTCGCCC ATCAGGACCG ACCCTTGGAC GTCCTTGTAC
AACGCACACC TTGCGCGCAT GAAGGCCGAC GCAAAAACCA TTGCTGTGCC TACCGCCGAA
GTCGACGCCA ACGCCCGCAA TGAGCGTCTG AAGTACTGGT TCGACCTGGG GATGAACGTG
CTGAATGTCG CCGCGTTCTT CGTGCCGGGT TTGAACACGG TCATGCTAGG CGTTTTTGCT
TACGACCTGA TGAGCTCTGT TTTCACCGGG TTCGAGGCCT GGGAAGAAGG TGATACCCGG
CAGGCACTGG CGCAGTTGGA ATCGCTGGCC ATCAACGCGG GCGTGATTGC CGGCTTTGCA
GTGGGCACCA GGATCGTCCA GGCGTCTGGC TTTGTCGATG CACTGAAAAG TGTATGGCAT
GAAGACAAGG AGGTGCTCTG GCACCCCGAC ATGAAACCCT ATGCGAGCAC GGCGGCTATT
CCTGAGGGGG CTCAACCCGA TCTGCTCGGC CATGTACACG TCGATGGGAA GACCTACCTG
AAGCTGGATG GGACCCTGTA CGAGGTGTTT CAGGGCACTG ATCAGCAATG GCGCGTGCGC
CACCCCGATG ACGCGCAGGC CTATGCCCCA CGCTTGCTGC ATCAGGGTAA CGCCCGCTGG
CAACTGGCCC ATGAACAGCC TCTGGAATGG GACCGCGAAC AGCTCGCGCG CCGCCTCGGC
AGCCATAGTG CAGGCCTGGA CGACAGCGAA CTGGACCATG CCATGCGCAG TACCGGTACC
GATCCAGACG TGCTGCGCCG CACCCAGGCA ACGGGCCTGC GTCCACCCGC TTTGTTGATC
GACACGCTGC AGCGGTTGCA ACTGGACAAT CAGACACAAC AAATCATCAA CTGCGTACGC
CATGGGTTGC CGCTGGCTGC GTACAAGAAC TTTGCCTTGC CTGAGTTGCT GCGCCTGCCG
GGGTGGCCCG AGGGGAACGT GCTCAAGGTT TACCAAGGGC CAGAACCCTG GGGCGAATCT
GTGCACTACG GCCCCCCTCA CACACTGGGC CAGACAGAAA TCGAAATTAC CCGTACCGAC
CTGGACAATG GCCAATTGAG CCAGACCGTG CTGGATCAGA TGGATGAACA AGCCATCAGG
CATTTGCTCG GTGACACACC AACCGAGCAC CGATCGTCCG CACTGAACAA CAAGCTTGCG
CAACACCTGG AACAGCACCG CGAAGCGCTG TTCGAGAGCC TGCAACAAAG GCACCGTCCC
ACACGCCCAG CAACCGCACA AACCCTCGCC CGGCAGTTTC CTGGGCTGCC GGACAGCGCG
CTTGAAGCAT TGCTTGGCAA CATCAGCAAC GCCGAACGGG AACGCCTGAC CAACGGCCGG
GTGCCGCTTC GCATTGCCGA GGAAGCGCGC CTTCTGCAAG CTCGAGCGCG GCTTGACCGC
GCCCTCCTCG GCCTGTTCAG GCCTAGCCTG GCCAACGACG ACAGTCTACG CATCAAACAG
GCGCTGCAAG CCGCGCACCC GCAGGCTGAC CCGGCCCGGT TGCTGCAACT TGCCCTTGAC
GATCGCCAGC ACTGCGCCTC ACTGATCGGC CAGCAACCCA TCAACCCCAG GTTCCGCTCC
CCTTTGCGGT TGGCCAACGG CCAGCTGGGC TATCCTCTGA GCGGCCGTGG CCTGCAAGGA
CGAGCCTTGC CGGCTGCACG TCGACTCCGG GCGCTCTACC CCGAACTCAA CAGCGAGCAA
ATCAGTGGGC TACAAGCCGA ACTGGCTCGA GGAGGTGACC TGGGTAGCGC CATCAACCGG
CTGGAGGTCG AGCAGCGTAC CCTCAACCGG GATCTCAACC GCTGGGTAAG CACCGCCCGC
ACCCTTGAAG AGCGCTTTGA TCGCCAGCAA TGCACCGAGC GATTGATGAG TGCTTCCCGC
CGTGAAGGCG GCGCGCACGC CAAAACACTG GTACTGGACC GTATGCAGCT CGAAGCGCTA
CCCGCTTTCA CTGCACGCAT GCCGCATATC CGCAATCTCA GGCTCGAGGG GCTGCAGATG
CGGCGCCTGG AGGGCAGCTT CCTGACGAAC TTCCCTAACC TGGAAACCCT GGAAATCGTC
GGCAACCCGG ACATCGATGC CGAAACACTG TTCGAGGCGC TCAGGTCGGC ACCGCGGCTA
CGCGAGCTGG GCCTGACAGA CAATGGCCTG ACCACCCTTT CACCCACCGC CCAACAGGTC
ATCGGGGCAA TGCCCGGCCT GCGGCTACTG TGGCTCAGCC GCAACCGGCT GCAACTCGAC
ACCAACAGTT TAGGCTTCCT GACGCGCTTG CCCCTGGATG CCCTCGGCCT GGGCCACAAT
CAAATCACAC TTGACGAAAG CCTTGCCGCC CAGTTCCAGG ACATGATCCA CCCCACTGTA
CTGCACCTGT CAGGCAACCC ACTGCAACTG CCGCCCGACC TGCGCTTCAT GGCCCGTCTT
GTCCACCTGG AGCTTGAGCG TTGCGAACTG CAGCAGTGGC CCGACAGCCT GACCGTCCTG
ATGAGCCAGC CCCAGTACCA ACTGCGCTAC CTGAACCTTT CGTCCAACCG CATTCGTACC
CTGCCAGACT TGCCTGGTGT GCTGCGTACC CCGTTTGCCC GCGATGTCGC CGCGCACTTG
CCGGAGCGCC GCTGGCTGTT CAACTACAAC ACCCTGGAAG CCCAGACACG TGCACGCCTG
GGCAGCAGCG GCGTCAACGT CTTCGAGCAC GCAGAAGACG TGCCACTGTG GCAGGGCATT
TTCCGTGGCG AGGCGAGCAG TGCCGAGGAG CAACTGTGGA GCGACCTGTT CGACCAAGGT
GAAAACGCAG CGCTGCTGGG CGTACTCGAA CGTCTTGCCC AATCGGCAGA AGCGCAGCGT
GATGGCGAGG CCCTGAGGGC ACGCGTCTGG AAGCTGTTGG ATGACGCGGC CCGCGACACC
GCGCTGCGTG AACGCCTCGC CACCGTGGCC GGCGACTTCC CGCCAACCTG TGGCGACGCA
GGTGCCGACG CGTTCAGTGC CTTGGAGATA GAAGTGCTGG CCCACGAAGC GGCAGCCGTC
GCCGGTAGTC GACCCGCTGA TCTACTGAGC CTGTATGGCA AGTTGTATCG ACGCAGTCAG
GTCAATCAAC TGGCCGATCG CATCAGCTGG AGAAGGTCCT TGCGCAAACA GGCGCTGCTC
GACGGGGCCT TCGATGAAAA CCTCCCCCCC TACGATGAGC TGGACGACCC CTCAGCCTTT
CCAGACAGCG AACTTCAAAC GGGGCTGGTG GACGATGTCG AGGTACGTTT GGCCTTGCGC
CAGTCGTTGG CCAGCGCGCT GGACTACCCT GAGCCGAGCC GAGGCATGCT GTACCGCAAT
ACGGCCAGAA TCAACGACAC AATCATCGAA ATGGTGAAAG CTGCGGTCCG CTCCCTGGAC
AAGGATGCCA TCGCTCGAGA GCAATGGTTG ACCCAGCAGC CTGGCTGGGT CGAGTACTTG
AAACGAGAGC ATGCGGCACA GTTCAGCCTG ATCACCGACT TCTGGCGGCC AGGCCTTGAC
TACCTCTATT ACTGCCTGGA TGAAACCGCC GACCCAGTGA CATCACTGGA CAGCTCTGTG
CGACGAGCCT TGGCCAGGGT CATGCCCGAA AGCCCGGTGG ATGCTGAGGG CAGGCTGCGG
CGCGTCGTGC TCAACGAGCA GCAGTATCGC CAGGGCGTGG ACGCGCTGAC TGCCGAGCAG
CAGCAGGTTG AAACCGGTCT GCTGATCAGC CTCACCCGCC AGACGCAAAC AATCGGCCGC
TGA
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| Protein sequence | MTCLTLSQML PRCQPPTDPR IRRTDRCQQL STAPRRLDQR GLSPPTKEMV TMTTPTPLHQ
NQITRSLPKW SKALQPTHTR KVVQSLYKEY LDEDGTPYSW YATADGPMRE QLHNALQTRN
KRLAQVKQAL GEFKDIIAFC GPLLTERLKL NVPVDRAQYV FQPFESEANI WVGVPDVETP
LVPDVEADVL ATRPVGQPQT RSLLEAALHN FEGLDEVGPY SRLTNAAGSD TPLAGLTMAD
FVRHCRALDL GKRYQDHLLA THEGANRAEI QRLSIAANRE ALRVQALIAK LKGLLSEAGL
DALGQLCDGK PHPTYENEAL HCWHFNLFDT PVHEILFIGP DNPYRKNPCI VYIPGDSEHP
VREFASRQEA GKHLRSRLLQ SEFRRALVHF AYKDRQKELA LKLEIALFEE DEAGIRKPRI
MPVIPFTLSP IRTDPWTSLY NAHLARMKAD AKTIAVPTAE VDANARNERL KYWFDLGMNV
LNVAAFFVPG LNTVMLGVFA YDLMSSVFTG FEAWEEGDTR QALAQLESLA INAGVIAGFA
VGTRIVQASG FVDALKSVWH EDKEVLWHPD MKPYASTAAI PEGAQPDLLG HVHVDGKTYL
KLDGTLYEVF QGTDQQWRVR HPDDAQAYAP RLLHQGNARW QLAHEQPLEW DREQLARRLG
SHSAGLDDSE LDHAMRSTGT DPDVLRRTQA TGLRPPALLI DTLQRLQLDN QTQQIINCVR
HGLPLAAYKN FALPELLRLP GWPEGNVLKV YQGPEPWGES VHYGPPHTLG QTEIEITRTD
LDNGQLSQTV LDQMDEQAIR HLLGDTPTEH RSSALNNKLA QHLEQHREAL FESLQQRHRP
TRPATAQTLA RQFPGLPDSA LEALLGNISN AERERLTNGR VPLRIAEEAR LLQARARLDR
ALLGLFRPSL ANDDSLRIKQ ALQAAHPQAD PARLLQLALD DRQHCASLIG QQPINPRFRS
PLRLANGQLG YPLSGRGLQG RALPAARRLR ALYPELNSEQ ISGLQAELAR GGDLGSAINR
LEVEQRTLNR DLNRWVSTAR TLEERFDRQQ CTERLMSASR REGGAHAKTL VLDRMQLEAL
PAFTARMPHI RNLRLEGLQM RRLEGSFLTN FPNLETLEIV GNPDIDAETL FEALRSAPRL
RELGLTDNGL TTLSPTAQQV IGAMPGLRLL WLSRNRLQLD TNSLGFLTRL PLDALGLGHN
QITLDESLAA QFQDMIHPTV LHLSGNPLQL PPDLRFMARL VHLELERCEL QQWPDSLTVL
MSQPQYQLRY LNLSSNRIRT LPDLPGVLRT PFARDVAAHL PERRWLFNYN TLEAQTRARL
GSSGVNVFEH AEDVPLWQGI FRGEASSAEE QLWSDLFDQG ENAALLGVLE RLAQSAEAQR
DGEALRARVW KLLDDAARDT ALRERLATVA GDFPPTCGDA GADAFSALEI EVLAHEAAAV
AGSRPADLLS LYGKLYRRSQ VNQLADRISW RRSLRKQALL DGAFDENLPP YDELDDPSAF
PDSELQTGLV DDVEVRLALR QSLASALDYP EPSRGMLYRN TARINDTIIE MVKAAVRSLD
KDAIAREQWL TQQPGWVEYL KREHAAQFSL ITDFWRPGLD YLYYCLDETA DPVTSLDSSV
RRALARVMPE SPVDAEGRLR RVVLNEQQYR QGVDALTAEQ QQVETGLLIS LTRQTQTIGR
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