| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3117 |
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| Symbol | |
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| ID | 5195451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3506586 |
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| End bp | 3507395 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640587563 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001268429 |
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| Protein GI | 148548327 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGAG GTTCCACTGA ACTGGTCGCC ATCGTCGGTT CGCCCATCGC CCAGGTGAAG
TCTCCGGAAA ACTTCAACAC CTGGTTCAAC CACAACAACT GCAACCTCGC CATGCTGCCC
TTCGACCTGC ACGAGGCGGC GCTGGACAGC TTTGCGGATA CCCTGCGTGG CTGGCAGAAC
CTGCGCGGTT GCGTGGTCAC CGTGCCTTAC AAGCAGGCGC TGGCAAACCG CGTGGACGGC
CTGAGCGAGC GCGCAGCTGC CCTGGGTTCG GTCAATGTGA TACGTCGCGA GCGCGACGGA
CGCCTGCTGG GCGACAACGT GGACGGCGTC GGCTTCCTCG GCGCTGCGCA CAAGCATGGC
TTCGAGCCGG CGGGCAAACG GGCACTGGTG ATCGGTTGCG GCGGTGTTGG CAGTGCCATT
GCCTATGCAC TGGCTGAGGC AGGGATCGCC AGCATTACCC TCAGCGACCC CAGCACAGCA
CGCATGGATG CTGTATGCGA ACTGCTCGGC AACGGCTTCC CCGGGCTCAC GGTCAGCACA
CAGTTCAATG GGCTGGAAGA CTTCGACCTG GTGGCCAACG CGTCCCCAGT CGGCATGGGC
ACCCGCGCAG AGCTGCCGCT GTCCGCCGCC CTGCTGGCTA CCCTGCTGCC AGACACCCTG
GTCGCCGACG TGGTCACCTC ACCCGAGATA ACCCCGCTGC TGAACCGCGC GCGGCAAGTA
GGTTGCAGGA TCCAGACTGG CCCGGAAATG GCCTTCGCCC AACTGGGCCA CCTTGGCGCC
TTCATGGGCG TCACACCGTT GGAGATCTGA
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| Protein sequence | MIRGSTELVA IVGSPIAQVK SPENFNTWFN HNNCNLAMLP FDLHEAALDS FADTLRGWQN
LRGCVVTVPY KQALANRVDG LSERAAALGS VNVIRRERDG RLLGDNVDGV GFLGAAHKHG
FEPAGKRALV IGCGGVGSAI AYALAEAGIA SITLSDPSTA RMDAVCELLG NGFPGLTVST
QFNGLEDFDL VANASPVGMG TRAELPLSAA LLATLLPDTL VADVVTSPEI TPLLNRARQV
GCRIQTGPEM AFAQLGHLGA FMGVTPLEI
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