| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2948 |
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| Symbol | |
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| ID | 5191986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3328392 |
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| End bp | 3331133 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640587394 |
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| Product | Type IV secretory pathway VirB4 components-like protein |
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| Protein accession | YP_001268260 |
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| Protein GI | 148548158 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATG ACGCGAGTCG CGATCCGTCC CGCTGGAAGC CCTGGCGCGC GGCACAGCGC
CGGCGCGCCA CCCTGGCCGA CGAAACCGCC CAGTACGCGC ACAACCCCAG CTTCACCGAC
CACCTGCCCT GGGTCGAGTA TCTGGAAGAG GGACAGTGCT TTCTGCTTGA TGACAACCGT
TCTGTGGGTG CCGTATTCGA GCTGCAACCG ATCGGCACGG AGGGTCGCGA GCCCGAATGG
TTGATGGCCG CACGCGACGC CCTGGAAGAT GCGCTGCAGG ACAGCTTCGA CGAGCTCGAT
CAGGCGCCCT GGGTGGTGCA GTTCTTCTGC CAGGACGACA GTGATTTTGC CCCGTACCTT
GAACGCCTGG AGCGCTACAT CGCGCCGCGC GCGCGAGGTA GGCCGTTCAC CGAGGCCTTC
CTCGCCTCGA TGCGCCGCCA TCTTGAAGCC GTCGGCAAAC CGGGTGGGCT GTTCGACGAC
CATGTGGTGT CTCACCTTCC GTGGCGCGGT AGCAATCGGC GTATTCGCCT GGTGGTCTAC
CGCTGGCTCG GGGAGCAGGC TGACGAGGAT GGGCAGAGCC CGGTCCAGCT GTTGAACCGC
ACCTGCGACC GCTTGGTGGC CTCGCTGCAG GCCTGCGGGG TCAGCCCTCG GCGGCTGACC
GGGCGCGACT TTTACGCCTG GTTGTTGCCT TGGTTCAACC CGGCACCAGC CCTCACTGGC
GAATCCCCCG CCGCGTTCTA TCGACGTGTG CCCTACCCGG AAGTGGATGA CGGTGAGGAG
CTGCCGCTGC CGTTCGACCA CGATTTCGCC GAGCGGCTGT TCTTTCAGGA ACCACGCTCA
AATAGCGAGC AAGGTCTGTG GTACTTCGAT CAGCAACCGC ACGCCGTGAT GGTGGTCGAC
AAGCTGCGCA GGCCGCCGCA TATCGGCCAG CTGACCGGTG AAACGCGCAA AGGCGAAGCG
TTGAACGCCT TGTTCGATCA GTTGCCCGAG CAGTCGGTCA TGAGCCTGAC CTTGGTGATC
ACGCCCCAGG ATGTGCTCGA GGAGCAGCTC AATCGCCTGG CGCGCAAAGC CATCGGCGAG
AACCTCGCCT CGACCCAGAC CCGCCAGGAC GTGGAGGAGG CCCGCGCGCT GATTGGCCGC
CAACACAAAC TGTACCGCGG CACGTTGGCG CTGTACCTGC GCGGTGCCGA TGAGCAGCAG
CTGCGCCAAC GTTCGGTCCA GGCAGCTAAC GTCCTGCTCG GCGCCGGCCT GCAGCCGGTG
CGCGAGGGCG ATGAAGTGGC CGCGTGCAAC AGCTATCTGC GCTGGTTGCC GATGGTCTAC
AACCCGGCGC GGGACACACG CAACTGGTAC ACCCGGCTGC TGTTTGCTCA GCACGTCGCC
AATCTGCTGC CCCTCTGGGG GCGCAGCATC GGTACCGGCA ACCCGGGTAT TACCTTCTTC
AACCGCGGTG GTGCGCCGCT GTCATTCGAC CCGCTGTCGC GCTTCGACCG CTCCATGAAC
GGCCACCTGC TGCTATTTGG CCCTACCGGC GCCGGCAAGT CGGCCACCCT GGTTTCAATC
CTGATGCAGG TCATGGCCGT GTACCGACCG CGGCTGTTCA TCGTCGAAGC GGGCAACTCC
TTTGGCCTGC AGGGCGACTA CTTCGCCACG CTCGGGCTAA CCGTCAACAA GGTTCAGCTC
AAACCAGGCA GCGATGTGAG CCTGGCGCCG TTCGCCCATG CCCGGCGCCT GATAGAGCAT
CCGGACCAGG TCGCCAGTCT GTCAACCGAA GAACTGGATG AGGCCGCGCC GGACAGTGGC
GAGCAGCGCG ATGTACTGGG CGAGCTGGAG ATCACCGCGC GGCTGATGAT CACCGGCGGC
GAAGCCAAGG AAGAGGCGCG CCTGACTCGC GCAGACCGCA GTCTGATCCG CGAGTGCATC
CTCGACGCCG CCCGGCACTG CGCGACGACT GAGCAGCAGG TGCTGACCCG CCATGTCCGC
GATGCCCTGC GTAAGGTCGC CAGCGACACC CACCTGCCTG ACAAACGCCG CGAGCGTGCG
CAGGAGATGG CCGAGTCGAT CGACCTGTTC TGCCAGGGCT TTGAAGGTGC CTTGTTCGAC
CGCGCCGGCA CACCCTGGCC GGAGAGCGAC GTGACGATCG TCGACCTCGC CACGTACGCC
CGTGAGGGTT ACGAGGCGCA GATGTCGATC AGCTACATCA GCCTGATGAA CACCGTGAAC
AACATTGCCG AGCGCGACCA GTACCTCGGC CGCCCGATCA TCATGGTCAC CGACGAAGGC
CACATCATCA CCAAGAACCC GCTGCTGGCC CCCTTTGTGG TCAAGGGCAC GAAGATGTGG
CGCAAGCTCG GCGCCTGGTT CTGGCTGGCA ACGCAGAACA TGGCCGACTT GCCCGATGCC
GCGCAGACCA TGCTCAACAT GATTGAGTGG TGGATCTGCT TGAACATGCC GCCAGCGGAA
ATCGAGGAGA TCGCCCGCTT CAAGAAACTC ACGCCGGCGC AGAAGGTACT GCTGCTCTCC
GCGAGCAAGG CCTCGGGCAA GTACACCGAG GGCGTGGTCC TGTCGAAGAA CCTGGAGACG
CTGTTCCGCG CAGTGCCGCC GAGCCTGTAC CTCGCTTTGG CCATGACCGA GCCCGAGGAG
AAAGCCCAGC GCTGGCGATT GATGGAAGAG CACCAGCAGC CTGAGCTGGA AGCCGCCCTG
CAGGTCGCGG CGGAGATTGA TCGCCTGCGT GGCATGTCAT AA
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| Protein sequence | MADDASRDPS RWKPWRAAQR RRATLADETA QYAHNPSFTD HLPWVEYLEE GQCFLLDDNR
SVGAVFELQP IGTEGREPEW LMAARDALED ALQDSFDELD QAPWVVQFFC QDDSDFAPYL
ERLERYIAPR ARGRPFTEAF LASMRRHLEA VGKPGGLFDD HVVSHLPWRG SNRRIRLVVY
RWLGEQADED GQSPVQLLNR TCDRLVASLQ ACGVSPRRLT GRDFYAWLLP WFNPAPALTG
ESPAAFYRRV PYPEVDDGEE LPLPFDHDFA ERLFFQEPRS NSEQGLWYFD QQPHAVMVVD
KLRRPPHIGQ LTGETRKGEA LNALFDQLPE QSVMSLTLVI TPQDVLEEQL NRLARKAIGE
NLASTQTRQD VEEARALIGR QHKLYRGTLA LYLRGADEQQ LRQRSVQAAN VLLGAGLQPV
REGDEVAACN SYLRWLPMVY NPARDTRNWY TRLLFAQHVA NLLPLWGRSI GTGNPGITFF
NRGGAPLSFD PLSRFDRSMN GHLLLFGPTG AGKSATLVSI LMQVMAVYRP RLFIVEAGNS
FGLQGDYFAT LGLTVNKVQL KPGSDVSLAP FAHARRLIEH PDQVASLSTE ELDEAAPDSG
EQRDVLGELE ITARLMITGG EAKEEARLTR ADRSLIRECI LDAARHCATT EQQVLTRHVR
DALRKVASDT HLPDKRRERA QEMAESIDLF CQGFEGALFD RAGTPWPESD VTIVDLATYA
REGYEAQMSI SYISLMNTVN NIAERDQYLG RPIIMVTDEG HIITKNPLLA PFVVKGTKMW
RKLGAWFWLA TQNMADLPDA AQTMLNMIEW WICLNMPPAE IEEIARFKKL TPAQKVLLLS
ASKASGKYTE GVVLSKNLET LFRAVPPSLY LALAMTEPEE KAQRWRLMEE HQQPELEAAL
QVAAEIDRLR GMS
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