| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2890 |
|---|
| Symbol | |
|---|
| ID | 5192959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3280721 |
|---|
| End bp | 3281509 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640587338 |
|---|
| Product | 4-oxalocrotonate decarboxylase |
|---|
| Protein accession | YP_001268204 |
|---|
| Protein GI | 148548102 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3971] 2-keto-4-pentenoate hydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.254961 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAG CCAACGTGAT TGCGAACCTG TTATGGGATG CGCAGCGGCA AAAGCTGCCC
TGTGCACCGG TGCGGGAATA TTTCGAGGGG AAGAGCGAGG TTGACCAGGC GCTATTGGCC
TATGCCGTAC AGCAGGTGAA TGTTCAGCGC CAGGTGGAGG GCGGCCGACG TATCGTCGGT
CGCAAGATCG GCCTTACCTC TCCGGCAGTG CAGAAGCAAT TGGGTGTAGA TCGGCCGGAC
TTCGGCACGT TGCTGGACGA CATGGCGATC GTCGATGGCG AGCCGATCAA CACTGCGCGT
CTTCTGCAGC CCAAGGTCGA AGCTGAGATC GCCCTGGTAC TCGAGCGTGA CCTCGATCGG
GAGCGTCATA CAGTCGCCGA CCTGATCGAC GCGACAGCGT ATGCACTTGC TGCAATCGAG
GTGGTGGATA GCCGTATCAC CGGTTGGAAC ATCCGCTTTG TTGACACCGT GGCAGACAAC
GCCTCATCGG GCTTGTTCGT ACTCGGTACT CAGCCTGTTG GCCTGTCGAA GCTTGATCTG
GCCGGTATGT CGATGCGCAT GGCGCGTGGC GAAGAGCTTG TATCGCAAGG GGCTGGAGCT
GCCTGCCTTG GCAACCCGTT GAACGCAGCG CGTTGGCTTG CTGACACGTT GGTCCAAGTG
GGCACGCCAT TGCGTGCCGG CGATGTGGTT CTGACCGGCG CTCTGGGGCC AATGGTCGCG
GTCGAGTCCG GTCACACCTA TACGGCATGG ATCGATGGCT TCGCCCCGGT ACGAGCAATT
TTCTCCTGA
|
|---|
| Protein sequence | MNEANVIANL LWDAQRQKLP CAPVREYFEG KSEVDQALLA YAVQQVNVQR QVEGGRRIVG
RKIGLTSPAV QKQLGVDRPD FGTLLDDMAI VDGEPINTAR LLQPKVEAEI ALVLERDLDR
ERHTVADLID ATAYALAAIE VVDSRITGWN IRFVDTVADN ASSGLFVLGT QPVGLSKLDL
AGMSMRMARG EELVSQGAGA ACLGNPLNAA RWLADTLVQV GTPLRAGDVV LTGALGPMVA
VESGHTYTAW IDGFAPVRAI FS
|
|---|
| |