| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2872 |
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| Symbol | |
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| ID | 5194483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3261579 |
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| End bp | 3264515 |
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| Gene Length | 2937 bp |
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| Protein Length | 978 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640587321 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001268187 |
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| Protein GI | 148548085 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.149383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.186346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTCCT TGGATAGAAA AAAGCCTCAA AATAGATCGA AAAATAATTA TTATAATATC
TGCCTCAAGG AGAAAGGATC TGAAGAGCTG ACGTGTGAAG AACATGCACG CATCATATTT
GATGGGCTCT ACGAGTTTGT GGGCCTTCTT GATGCTCATG GAAATGTGCT TGAAGTGAAC
CAGGTCGCAT TGGAGGGGGG CGGGATTACT CTGGAAGAAA TACGAGGGAA GCCATTCTGG
AAGGCGCGTT GGTGGCAAAT TTCAAAAAAA ACCGAGGCGA CCCAAAAGCG ACTTGTTGAA
ACTGCATCAT CCGGTGAATT TGTTCGCTGT GATGTTGAGA TTCTTGGAAA ATCAGGTGGA
AGAGAGGTAA TAGCCGTCGA TTTTTCATTG CTGCCAATTT GCAATGAAGA AGGGAGCATT
GTTTACCTTC TTGCGGAAGG GCGCAATATT ACCGATAAGA AGAAAGCCGA GGCCATGCTG
GCGTTGAAGA ACCAGGAATT GGAGCAGTCG GTTGAGTGTA TCCGAAAACT CGATAATGCG
AAGAGTGATT TCTTTGCCAA GGTGAGCCAT GAGTTGCGCA CTCCGCTGTC TTTGATTCTA
GGGCCACTGG AAGCCGTTAT GGCGGCAGAG GCTGGGCGTG AATCGCCGTA TTGGAAGCAG
TTTGAGGTCA TTCAGCGTAA TGCAATGACC CTGTTGAAAC AGGTTAACAC GCTGCTTGAC
TTGGCGAAAA TGGACGCCCG GCAGATGGGG CTTTCCTATC GGCGAGCCAA TCTTAGTCAG
CTCACCCGTA CTATTAGCTC GAATTTTGAA GGAATAGCCC AGCAAAAATC AATAACGTTC
GATACAAAAC TGCCTGTACA GATGGTCGCT GAGGTGGATT GTGAGAAATA CGAACGCATT
ATCCTTAACT TGCTTTCCAA TGCGTTTAAA TTCACCCCTG ACGGGGGGCT TATCCGTTGC
TGTCTTAGTT TGAGTCGACC AAATTATGCC TTGGTTACTG TATCTGATAG CGGGCCGGGT
ATTCCTCCTG CACTGCGTAA AGAAATATTT GAACGTTTCC ACCAGCTAAG CCAGGAAGGT
CAACAAGCTA CGCGGGGTAC AGGCTTGGGG CTTTCCATTG TGAAAGAATT CGTTGAATTG
CACCGTGGAA CAATTTCTGT AAGTGATGCC CCGGGCGGGG GGGCGCTTTT TCAGGTAAAG
CTGCCGCTGA ATGCTCCTGA AGGTGCTTAT GTTGCGAGTA ACACCGCGCC GCGAAGAGAT
AATCCTCAGG TCGTGGATAC GGATGAGTAC CTTTTGCTGG CGCCCAATGC GGAAAATGAA
GCCGAGGTGC TTCCATTTCA ATCCGACCAG CCTCGGGTGC TAATCGTTGA AGATAACCCT
GATATGCGTG GTTTTATAAA GGACTGTCTC AGTAGCGACT ATCAAGTTTA TGTTGCACCC
GACGGTGCAA AGGCATTGGA GTTGATGTCA AACATGCCGC CAGACCTGTT GATTACAGAC
CTGATAATGC CTGTTATGAG CGGCGATATG CTGGTTCACC AAGTGCGTAA GAAAAATGAA
CTTTCACATA TCCCGATCAT GGTGCTGTCG GCCAAGTCAG ACGCAGAACT GCGTGTGAAA
TTGCTCTCCG AGTCGGTGCA GGACTTTCTT CTTAAGCCAT TTTCTGCTCA TGAGCTACGA
GCGCGTGTAA GCAATCTGGT ATCCATGAAG GTGGCAGGCG ATGCGTTGCG TAAGGAGCTT
TCCGATCAGG GGGATGATAT TGCGATACTT ACTCACCGTC TGATCAAAAG TCGCCATCGT
CTTCAGCAGA GTAACATCGC ATTATCCGCC TCGGAAGCGC GTTGGAAAGC AGTGTATGAA
AACTCTGCGG CCGGTATTGT ACTGACCGAC CCGGAAAACC GAATACTCAA CGCCAATCCT
GCATTTCAAC GCATTACCGG ATATGGGGAA AAGGATTTGG AGGGACTTTC CATGGAGCAA
TTGACTCCAT CTGACGAAAG CCCACAGATA AAGCAGCGTC TGGCCAATTT GCTTCAGGGT
GGGGGAGCGG AATACAGTGT GGAGCGCTCC TATCTATGCA AAAATGGTTC TACGATTTGG
GCCAATGCGA GTGTCTCGCT GATGCCTCAA CGTGTCGGTG AATCTCCAGT TATACTGCAG
ATCATCGATG ACATCACTGA GAAGAAACAA GCACAGGAAA ATCTTAACCA ATTGCAGCAA
CAACTTGTGT ACGTTTCCCG ATCAGCTACG ATGGGTGAAT TTGCAGCCTA TATTGCACAC
GAGATAAACC AACCGCTCTC GGCGATCATG ACCAATGCCA ATGCTGGCAC ACGTTGGTTA
GGTAATGAGC CATCTAACAT CCCAGAGGCT AAAGAGGCAC TGGCTCGCAT TATCCGAGAT
TCCGACCGCG CTGCAGAAAT TATCCGTATG GTACGCTCCT TCCTGAAGCG TCAAGAAACG
GTGCTGAAAC CGATTGATCT AAAAGCACTG GTAACTGATA CAAGCCTGAT ACTTAAGGCC
CCTAGTCAGA ATAACAGTGT CAATTTGGAT GTTGTTGCGG ATGATGAACT CCCTGAGATA
TGGGGGGATG GTGTACAGAT CCAGCAGTTG ATAATAAATC TGGCTATGAA CGCTATTGAA
GCGATCAGCC AAGCCGACTG TGAAACCAGG CAGCTAACCC TGTCATTCTC AGGCAATGAT
ACAGGTGATG CGCTTGTTAT CTCAGTGAAA GATACAGGTC CAGGTATTTC AGAGAGGCAG
ATGGCGCAGT TGTTCAACGC ATTCTACACC ACAAAAAAAG AAGGGCTTGG TATGGGATTG
GCAATCTGTC TTACAATCAC GGAAGTGCAT AACGGTAAAA TATGGGTTGA GTGCCCGCCC
GCTGGGGGTG CTTGTTTCCT GGTAAGTATC CCTGCCAGAC AGGGCTCCGG CACATGA
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| Protein sequence | MSSLDRKKPQ NRSKNNYYNI CLKEKGSEEL TCEEHARIIF DGLYEFVGLL DAHGNVLEVN
QVALEGGGIT LEEIRGKPFW KARWWQISKK TEATQKRLVE TASSGEFVRC DVEILGKSGG
REVIAVDFSL LPICNEEGSI VYLLAEGRNI TDKKKAEAML ALKNQELEQS VECIRKLDNA
KSDFFAKVSH ELRTPLSLIL GPLEAVMAAE AGRESPYWKQ FEVIQRNAMT LLKQVNTLLD
LAKMDARQMG LSYRRANLSQ LTRTISSNFE GIAQQKSITF DTKLPVQMVA EVDCEKYERI
ILNLLSNAFK FTPDGGLIRC CLSLSRPNYA LVTVSDSGPG IPPALRKEIF ERFHQLSQEG
QQATRGTGLG LSIVKEFVEL HRGTISVSDA PGGGALFQVK LPLNAPEGAY VASNTAPRRD
NPQVVDTDEY LLLAPNAENE AEVLPFQSDQ PRVLIVEDNP DMRGFIKDCL SSDYQVYVAP
DGAKALELMS NMPPDLLITD LIMPVMSGDM LVHQVRKKNE LSHIPIMVLS AKSDAELRVK
LLSESVQDFL LKPFSAHELR ARVSNLVSMK VAGDALRKEL SDQGDDIAIL THRLIKSRHR
LQQSNIALSA SEARWKAVYE NSAAGIVLTD PENRILNANP AFQRITGYGE KDLEGLSMEQ
LTPSDESPQI KQRLANLLQG GGAEYSVERS YLCKNGSTIW ANASVSLMPQ RVGESPVILQ
IIDDITEKKQ AQENLNQLQQ QLVYVSRSAT MGEFAAYIAH EINQPLSAIM TNANAGTRWL
GNEPSNIPEA KEALARIIRD SDRAAEIIRM VRSFLKRQET VLKPIDLKAL VTDTSLILKA
PSQNNSVNLD VVADDELPEI WGDGVQIQQL IINLAMNAIE AISQADCETR QLTLSFSGND
TGDALVISVK DTGPGISERQ MAQLFNAFYT TKKEGLGMGL AICLTITEVH NGKIWVECPP
AGGACFLVSI PARQGSGT
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