| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2445 |
|---|
| Symbol | potE |
|---|
| ID | 5192741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2793078 |
|---|
| End bp | 2794418 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640586900 |
|---|
| Product | putrescine transporter |
|---|
| Protein accession | YP_001267766 |
|---|
| Protein GI | 148547664 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.273787 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.196088 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATT CAAGCAAAAA AATGAGCCTG GTCGGGCTCA CGACGCTGGT GACAGTCAAC
ATGATGGGTT CGGGGATCAT CATGTTGCCT ACCAACATGG CTCAACTGGG TGCCGTCTCG
CTGTTGTCGT GGCTTTTCAC GGCAATCGGC TCGATGGCCA TCGCTTATTG TTTTGCCCAG
TGCGGCGTCT TCTGCTCACG CTCTGGCGGG TTGTCCGCCT ACACCGAAGA GGCTCACGCG
AAGTCGGGTT TTTTCCTCTG CTCGTACCTG TACTTCCTGT CTCTGGCCAT CGCCAACGTA
GCCGTGGCCA TCTCTGCGGT GGGCTACATG ACCGCTTTCT TGCCCTGGCT GGGTAGTGGT
GCCATCCCGT TGTGCATAGG CACCATCGGG CTAATCTGGC TGACCACCTT CGCCAACTTC
GGCGGCCCCG GCATCACCGG CAAGATCGGT GCTTTCACGG TCTGGGGCGT GATCATTCCG
GTAGCGGGCC TTTGCATCAT CGGCTGGTTC TGGTTCAAGC CCGATGTACT GGTCGCCGCC
TGGAACCCTA ACGATCTGCC GATTTCCGAG TCCATCGCCA AAGCCATTCC TCTGACCCTG
TGGGCGTTCC TGGGCATGGA GTCGGCGGCC CAAGCCACCG ATGCCGTGGA AAACCCCAAG
CGCAACGTGC CACTGGCCTG CCTGTTCGGC ACCTTGGGGG CTGCCGGTGT CTACATACTG
TCGACCACCG TCATCCAGGG CATCATTCCC AATGCCGATC TGGCCAAGTC CACGGCGCCC
TTCGCGCTGG TCTACGCCAC GATGTTCAAT CCGTTGGTAG GCCATATCGT CATGGCCCTG
GCGGTCATGG CGTGTGTCGG CTCGCTGCTG GGGTGGCAAT TTACCTTGGC ACAAACTGCC
AAGATGACCG CCGACCAGAA CCTGTTCCTC AAGTTCTTCA GCAAGGTCAA TGCCATGAAC
GCCCCTGTCG TCGGCATGAT CGTCTGTGGC GTGCTGCAAA CCTTGATGGC CCTGTCGACC
ATTTCACCGG ATGCCGCCGC CCAGTTCAGC AAGCTGGTCA ACCTGGCGGC GGTGACTAAC
CTCATCCCAT ATTTAACCGC GCTGACTGGT CTGCTGGTCA TCATGTACAA GGCCGGTGTC
TCAACGACGA TCTACGCGCG CAACCTGGTA GTGCTGCTGG TTGCGGTGAC GTACTCCTTG
TATGCCCTGT ATGCCTGCGG CAAGGATGCG GTCATGGGCG GCACCCTGGT ACTGGCCTTC
GGTTATCTGC TCTACGGTTT CCTCGCCAAG CGTTTCACCG ACACGCTGCC AGCCGAACAG
GCCGGGGCCG GCAATCCTTA G
|
|---|
| Protein sequence | MADSSKKMSL VGLTTLVTVN MMGSGIIMLP TNMAQLGAVS LLSWLFTAIG SMAIAYCFAQ
CGVFCSRSGG LSAYTEEAHA KSGFFLCSYL YFLSLAIANV AVAISAVGYM TAFLPWLGSG
AIPLCIGTIG LIWLTTFANF GGPGITGKIG AFTVWGVIIP VAGLCIIGWF WFKPDVLVAA
WNPNDLPISE SIAKAIPLTL WAFLGMESAA QATDAVENPK RNVPLACLFG TLGAAGVYIL
STTVIQGIIP NADLAKSTAP FALVYATMFN PLVGHIVMAL AVMACVGSLL GWQFTLAQTA
KMTADQNLFL KFFSKVNAMN APVVGMIVCG VLQTLMALST ISPDAAAQFS KLVNLAAVTN
LIPYLTALTG LLVIMYKAGV STTIYARNLV VLLVAVTYSL YALYACGKDA VMGGTLVLAF
GYLLYGFLAK RFTDTLPAEQ AGAGNP
|
|---|
| |