| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2228 |
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| Symbol | |
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| ID | 5191320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2535705 |
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| End bp | 2537771 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586685 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001267551 |
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| Protein GI | 148547449 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.899414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCTC GTGATCTGAA CTCACTGCGC CAACAAGTCG AAGACCTCCA GCGACAGAAC
ACACTGCTGG AGCAACGGCT TGCAAGCCAC CAGGCGCACG ACCAGGACTT CTATCGCTCA
CTGTTCGACA CCATGGACGA AGGCTTCTGC ATCATCGAGT TCTTCGATGG CCCCCATGGC
CCCCTGAGTG ACTACGTGCA CGTGCTGGCC AACGCAGCCT ATGCCAAACA CGCCGGCATC
CCCAACGTGG TCGGGCAAAA ACTGCGGGAG ATGGTGCCCG ATGAGGCGGA TGACTGGGTG
GCCCGCTATG GCGCGGTGCT TCGCACCGGC GAACCGCTGC ACTTCGAGCA GGAACTGATT
GCCACGGGCC ACGTGCTGTC GGTGACCACT TTTCGCATAG AACCTGCCGA GAAACGCCAG
GTAGCGGTAC TGTTCAAGGA TGTCACCGAA CGCCGGCGTG CAGAGCAGGC CCTGCAGCGC
CTGAACGAAG AGCTCGAACA ACGGGTGAAT GCCGCACTGG CGGAGCGACG CTTGTTTGCC
GAGCTGGTCG ATCACAGTGT GGTCAATGTG CATGTAATCG ACAAGGACCT GCGCTGGCTG
GCTGTCAATC GCCAGGCCAG GCATGACTTC CACCTGCTGT ACGGGAGTAC ACCCGAAATC
GGCGAATACC TGCCCGGGTT GTTCGAGGAT GGCGCCGCCG GCCAGACGCC TGTTCTGCCG
ATGTGGCAGC GCGCCCTGGC AGGCGAGCAG TTCATCGAGA TCGGCACCTT CGGCAAGCCC
CCCGCGCTGC GCCATTATGA GTTGCGCTTC AACGCCTTGC GCGACCCAGA AGGCGAGGTA
CATGGCGCGT TTCTGTTCGC CTATGACATC AGTGAGCGAG TACAGGAGCA GGAACGCTTG
GCCAAGGCCG AAGCGGCGCT GCGCCAGGCA CAGAAGATGG AAGCCGTAGG CCAGCTCAGT
GGCGGCATAG CCCACGACTT CAACAACTTG CTGGGCGGCA TCCTGGGCGC CCAGGAGCTG
ATGCGGCAAC GCCTTGAGCA GTCACGCTTC GACGCCCTGG CGCCCTTGCT GGAGCTGTCC
AGCAGCGCGG CGCAGCGGGC CTCTTCGCTG GTGCACCGGC TGCTGGCCTT CTCCCGCCAG
CAGACCCTGC AACCCTGCTC CACGCAAGTG GCCACCTTGG TGGCCGGCAT GGAAGACCTG
CTGCGCCGCA CCATCGGCCC GGCGATTACC CTGAGCAGCC GCTTTGCCAG CCAGCTGTGG
CCGACCTTCA TCGACCCTCC CCAACTGGAA AGCGCCTTGC TCAACTTATG CATCAACGCG
CGCGATGCCA TGCCTGCCGG TGGTGTGATC GAGATCATCG GCGACAACCT GCAGCTTGAC
GACGAGCAGG CCGTGGCACT GGAACTGCCG GCCAGCGAGT TCGTGCGGCT GAGCATCGTC
GACAACGGTA GCGGCATGTC GGCTGAAGTT GTCGAGCGCG CAGTCGAGCC GTTCTTCACC
ACCAAGCCGA TGGGCCAGGG CACCGGCCTG GGTCTGTCCA TGACCTATGG CTTCGTGCGC
CAGTCGGGTG GGCAATTACG GGTGCTGTCG GTGCCTGGCG AGGGTACCCG TATCGAGCTG
CTGTTACCCC GCCACCACGA GCAAGCCCAG GCGCCAATCA GCAAACCTCC GCGCACGCTC
TTGCAAAGAA GCAGCGAGAC TGCAAAACGC ATTCTGTTGG TTGAAGACCA GACGGCCTTG
CGCCTGGTGA TTGGCGAAGT GTTGGAAGAG CTGGGCTATC GGGTGGACGC CTTCGAGAAC
GGTCCGTCTG CCCTCACCCA CCTGCAAAGC GGCGAACGGC CAGACTTGCT GCTGAGCGAT
GTCGGCCTGC CTGGCGGCCT GAATGGCCGC CAGGTAGCCG AACGCTGCCG TGAGCGCTAC
CCGGACCTCA AGGTGCTGTT GATCACCGGT TACGATGAGA GCGCGGCGCT CAGCGACGGC
CAACCGCTGC AAGGTACGTT GGTGTTGACC AAGCCGTTCG AACTGGAAGC ACTGGCAGAG
CGGGTTCGCG AGCTGCTGGA GCCTTGA
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| Protein sequence | MPSRDLNSLR QQVEDLQRQN TLLEQRLASH QAHDQDFYRS LFDTMDEGFC IIEFFDGPHG
PLSDYVHVLA NAAYAKHAGI PNVVGQKLRE MVPDEADDWV ARYGAVLRTG EPLHFEQELI
ATGHVLSVTT FRIEPAEKRQ VAVLFKDVTE RRRAEQALQR LNEELEQRVN AALAERRLFA
ELVDHSVVNV HVIDKDLRWL AVNRQARHDF HLLYGSTPEI GEYLPGLFED GAAGQTPVLP
MWQRALAGEQ FIEIGTFGKP PALRHYELRF NALRDPEGEV HGAFLFAYDI SERVQEQERL
AKAEAALRQA QKMEAVGQLS GGIAHDFNNL LGGILGAQEL MRQRLEQSRF DALAPLLELS
SSAAQRASSL VHRLLAFSRQ QTLQPCSTQV ATLVAGMEDL LRRTIGPAIT LSSRFASQLW
PTFIDPPQLE SALLNLCINA RDAMPAGGVI EIIGDNLQLD DEQAVALELP ASEFVRLSIV
DNGSGMSAEV VERAVEPFFT TKPMGQGTGL GLSMTYGFVR QSGGQLRVLS VPGEGTRIEL
LLPRHHEQAQ APISKPPRTL LQRSSETAKR ILLVEDQTAL RLVIGEVLEE LGYRVDAFEN
GPSALTHLQS GERPDLLLSD VGLPGGLNGR QVAERCRERY PDLKVLLITG YDESAALSDG
QPLQGTLVLT KPFELEALAE RVRELLEP
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