Gene Pput_2007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2007 
Symbol 
ID5193885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2269315 
End bp2269896 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content62% 
IMG OID640586465 
ProductTetR family transcriptional regulator 
Protein accessionYP_001267331 
Protein GI148547229 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.382346 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCCGG TCAATGCCGC AATGCGCTGT GCCAACTTTG AGGAGCGACG TGACCAGGCC 
ATGGCATTGT TTGCCGAAAA GGGCTTTGGC CAGGTCAGCA TGCGCGAGCT GGCGGCCCAT
GTGGGGCTGA CCGCCGGCTC GCTGTACCAT CACTTTCCCA GCAAGCAGGA CCTGCTGTAC
GACTTGATCG AAGAGTTGTA CGAAGAGCTG CAGGCCACCC TGGACCAGGC CCGCCGGGCC
ATGGCCCGGG GGACATCGGC ATTGAGCTGC CTGATTGCTG CGCACTGGCA GTTGCATGCC
GAACGGCCGC TGCAGTTTCG GCTGGCCGAG CGGGATCTGT GTTGTTTGAG TGAGGCGCAA
CAGGCGCACC TGGCATCGTT GCGCAAGCGC TATGAGGCGG GTTTGCTGCG CTTGATCGCA
CCGCAAGCGA AACTGCCGGG GCAAGCGTTG GACGCTACAG CGCATGTACT GGCGACGTTT
CTCAACCAGC TGCCGGGGTT GCTCAAAGCA CTGCCTGAAG CGCAAGGGTT GGAGCTGATG
GAAAACTTGC TGGTCGGCGG AATTGAGCGG ACGCTGCGAT AG
 
Protein sequence
MPPVNAAMRC ANFEERRDQA MALFAEKGFG QVSMRELAAH VGLTAGSLYH HFPSKQDLLY 
DLIEELYEEL QATLDQARRA MARGTSALSC LIAAHWQLHA ERPLQFRLAE RDLCCLSEAQ
QAHLASLRKR YEAGLLRLIA PQAKLPGQAL DATAHVLATF LNQLPGLLKA LPEAQGLELM
ENLLVGGIER TLR