| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1884 |
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| Symbol | |
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| ID | 5191007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2157894 |
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| End bp | 2159714 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586348 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001267216 |
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| Protein GI | 148547114 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.185674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAATG CCAACCTTGC GCCCGCTTCG CTGGTGCGTG CTGCCGTGGT TGCCCTGGCC
ATGGGCAGCA GCTTGCCGCT GTGGGCCGTA GAGGCCCCTG CAAAGGTCCA GGTGCCGACG
CTGGCCTACG ACGACCGGCA GATCATCCTG GTGTGGGAAA AGCCCGCCAG CCATGCCGAG
ATCGTCGACT ACCACGTGTA CGCCAATGGC CGGTTGCTGG GTGCAAGCAA CGCCAACAAC
GAGCAGGTGT CACCGGCCAA ACCGTACATC GACCGGTTCT ACGAGCAGGA CCTGCACAAC
TTCCACCACC GCATCGCCAT TCACAGCTTC ACCGCCCAAG GGCTTGCCCC CGATACCGAG
TACCACTTCA CCGTGCGCTC GGTCGATCGC AATGGCAAGG AGTCTGCTGA CAGCCCCGTG
GTTGTGCAGC GAACCACGGC CATACCGGCG CTGTTCAACG TGCAGCGCTA CGGTGCCAAG
GGCGATGGCA AGGCGCTCGA CACGGCTGCC ATTCAGCGTG CCATCGATGC TTGCAGCAAG
GGCTGCAAGG TGTTGCTGCC TGCCGGCACG TACAAGAGCG GGGCGCTCTA CCTCAAGAGC
GACATGACCC TGGAAATCGC CGAGGGCGCT ACCCTGTTAG GTTCCGAGCG TGCCGAGGAC
TACCCGCGCC AGGGCTATAT CCAGTACCCG TATTCCACCA CCGTGCGTCC GGCCTCGCTG
ATCAATGCCT TGCCGCGCGA CCCGCGTGCG CATCAGGCCT TCGAGAATAT CCGCATCGTT
GGCAAGGGCA CCATCGACGG CAATGGCTGG AAGCGTAACC CGGATGTGCT CGACGAGCGC
GGGCAAGCCT TGCCCTTCTA CCTGCCCAGC GACAACAGCC GCTACATGCA CGATGGCGTG
CTGGCCAAGG CTCAGGTGGA GCGAGCGGTG GCCGAGGGCA TGAACGTCAA GGACGCCTAC
GGTCAGATGC GTTCCTCGCT GATTACCCTG CGCAATGTGA AAAACGTGTT CTATGGTGGC
TTCACGGTGG TCAACCCGGC CTACCACGGC ATCATGAACC TGGAGACGCA GAATGTGGTG
CTGGCTAACA CCACGCACCG TACCTACGAC GCCAACAACG GCGACGGTAT CGAGTTTGCC
AACAGCCGCG GCGCCCTGGT GTTCAACAAC TTCTTCGACA CCGGAGACGA CTGCGTCAAC
TTCGCCGCCG GCACTGGGGC GGATGCGGTT CACCAGAAGG CGCAGGAGGA GGCCTGGATC
TTCAACAACT ATTTCCGCAA AGGCCATGGC ATGGTCGTGG CGGGCAGCCA TACCGGCGCG
TGGATTCAGC ACATCCTGGC CGAGGACAAC GTCTCCGATG GCACCGATGC CGGGCTGCGC
ATGAAAAGCA CCAACTTCAT GGGCGGTGGC GCACGCCACG TCACTTTCCG TGATTCGGCC
ATCCGCAATA CGGCAAAACA GGCCTTCATC TTCACCCTGG ATTACAACGA CCCGAATGCC
AAGCTCGATT ACAAGCGCTC GGCGGTGGCG GGGCAGTTCC GGGATATCAC GGTCAGCGAC
GTAAGCGTGG AAAACGCCCG CACCGCTGCC ATCGAGGTGA AGGGCGATAG CAGCCATGGC
GCCTGGCATC AGGGCCTGGT GTTTGAACGA GTGCGCTTTC GCGGGCCAGC CCCGGTGAAG
ATCGATGGCC TGAAGGACTC GCGTTTCGAC GGGCTTCGCT TCACTGACAC CGGGGGTGCC
AACCCTTGGC AGGTGCAGGG CAGCCAAGGG CTTGTCTATA CGGACGTAGA GCCCGCGCCG
GGGCCTCAGG CCTCGCTGTA G
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| Protein sequence | MPNANLAPAS LVRAAVVALA MGSSLPLWAV EAPAKVQVPT LAYDDRQIIL VWEKPASHAE
IVDYHVYANG RLLGASNANN EQVSPAKPYI DRFYEQDLHN FHHRIAIHSF TAQGLAPDTE
YHFTVRSVDR NGKESADSPV VVQRTTAIPA LFNVQRYGAK GDGKALDTAA IQRAIDACSK
GCKVLLPAGT YKSGALYLKS DMTLEIAEGA TLLGSERAED YPRQGYIQYP YSTTVRPASL
INALPRDPRA HQAFENIRIV GKGTIDGNGW KRNPDVLDER GQALPFYLPS DNSRYMHDGV
LAKAQVERAV AEGMNVKDAY GQMRSSLITL RNVKNVFYGG FTVVNPAYHG IMNLETQNVV
LANTTHRTYD ANNGDGIEFA NSRGALVFNN FFDTGDDCVN FAAGTGADAV HQKAQEEAWI
FNNYFRKGHG MVVAGSHTGA WIQHILAEDN VSDGTDAGLR MKSTNFMGGG ARHVTFRDSA
IRNTAKQAFI FTLDYNDPNA KLDYKRSAVA GQFRDITVSD VSVENARTAA IEVKGDSSHG
AWHQGLVFER VRFRGPAPVK IDGLKDSRFD GLRFTDTGGA NPWQVQGSQG LVYTDVEPAP
GPQASL
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