| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1594 |
|---|
| Symbol | ligA |
|---|
| ID | 5193176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1784140 |
|---|
| End bp | 1786470 |
|---|
| Gene Length | 2331 bp |
|---|
| Protein Length | 776 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586063 |
|---|
| Product | NAD-dependent DNA ligase LigA |
|---|
| Protein accession | YP_001266934 |
|---|
| Protein GI | 148546832 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0867553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG AAACCCGTAT CCTCGAACTG CGTGCCGAGC TCGATCAGCA TAACTATCGC
TACTACGTGC TCGACGAGCC CAGCGTGCCC GATGCCGAAT ACGACCGCCT GTTCAACGAG
CTCAAGGCGC TGGAAGCTGA ACACCCGCAC CTGGTAACCC CCGACTCGCC CACCCAGCGC
GTTGGCGGCG CTGCCTTGGC TGCGTTCAGC CAGGTGCGCC ACGAAGTGCC CATGCTCAGC
CTGGGCAACG CCTTCGAAGA AGCCGATCTG CGTGAGTTCG GTCGCCGTGT GGTAGAAGGC
CTCGATCAGC CGGGTGCGGT CGACTACAGC TGCGAACCCA AGCTCGATGG CCTGGCCGTG
AGCCTGCTGT ACCGCGACGG ACAGCTGGTG CAGGGCGCCA CCCGGGGCGA CGGCACCACT
GGCGAAGACA TCAGCGCCAA CGTACGCACC GTGCGCAACA TCCCGCTCAA GTTGCAGGGC
AAGGGCTGGC CGGCAGTGCT GGAGGTGCGC GGCGAGGTGT ACATGAGCAA GGCCGGTTTC
GACCGGCTCA ATGCCGCCCA GGCCGAGGCC GGTGGCAAGA CCTTCGCCAA CCCGCGCAAT
GCCGCCGCTG GCAGCTTGCG CCAGCTGGAC TCGAAAATCA CCGCCAGCCG CCCGCTGGAG
TTCTGCTGCT ATGGCGTCGG CCAGTTGTCC GAAAGCATCG GCGACAGCCA CATCGGCATC
CTCGAGCAAC TCAAGGCCTG GGGCCTGCCG ATCAGCCGCG AGCTCAAGCA TGCGGCGGGC
ATCGAAGAAT GCCTGGCCTA CTACCGCGAC ATTGGCGAGC GGCGTAACAG CCTGCCGTAT
GAGATCGACG GTGTAGTGTT CAAGGTCAAC AGCCTGGCTG CCCAGCGCGA GCTGGGCTTC
CGCGCCCGAG AGCCGCGCTG GGCGATTGCC CACAAGTTCC CGGCCATGGA AGAGCTGACC
GAGGTGCTGG ACGTTGAGTT CCAGGTTGGC CGTACGGGAG CCGTAACGCC TGTGGCGCGG
CTGAAGCCGG TCAAGGTGGC CGGTGTGACC GTGTCCAACG CCACCTTGCA CAACATGGAC
GAAATCGCCC GCCTGGGCCT GCGCATCGGC GACACGGTGA TCATTCGCAG GGCCGGCGAC
GTGATCCCGC AGGTGATGCA GGTGGTGCTG GAGCGTCGTC CGCAAGACGC CCGCCCGGTA
GAGGTGCCAA GCGAGTGCCC GGTGTGTGGT TCGCAGGTCG AGCGTACCCA GCTGGTCAAA
CGCAGCAAAG GCAAGGAAAC CACCAGCGAA GGTGCGGTGT ACCGCTGCGT CGGCCGCCTG
GCCTGTGGCG CGCAGCTCAA GCAGGCGATC ATTCATTATG TGTCGCGCCG TGCCATGGAC
ATCGACGGCC TGGGTGAGAA GAGTGTCGAG CAGTTGGTGG ATGAAGGCCT GATCGGCTCG
CCGGCTGACC TGTACAAGCT GCAGTTCGAG CAGGTCGTCG GCCTTGAAGG CTTTGCCGAG
GTGTCGACCC AGAAGCTGCT GGATGCCATC GAAGCCAGCA AGCGCCCGAG CCTGGCGCGC
TTCATCTACG CGCTGGGCAT CCCGGATGTC GGCGAGGAGA CTGCCAAGGT GCTGGCCCGC
TCGCTGGGCA GCCTGGCGCG CGTGCAGCAG GCACTGCCGC AGGTGCTGAC CTATTTGCCG
GACATCGGTC TCGAAGTGGC CTACGAGATC CACAATTTCT TTGAAGACGA GCACAACCAG
AAGGTTATCC AGCAGTTGCT CGACAGCGGT ATGCAGTTGC AGGACGAAGG TGAGCTGGCT
GCCGAATTTG CCGCCAGCAC CACCTTGGCC GGGATGATCG CCAAGCTCGA CATTGCCTCC
GTCGGCCCGA CCGGTGCCGA GAAGTTGGTG GCCAAGCTCG ACAGCCTGGA CAAGATCATC
GCCGCCGACG GCATTGACCT GCGCCAGGCC CTGGCGGCCA AGCAGGCCGA CGCAGTGCGT
GAGTTCTTCA AGGATGAAGC AAACCAGAAA CTGGCCCGGG ACATCGAAGC GCAGCTGCTG
GCATTCGGCA TGCACTGGAG CAGCGAGAAG AAGGTGGCCG AAGGCTTGCC GCTGGCCGGC
CAGACCTGGG TGCTGACCGG TACGCTGGAG CGCATGAGTC GGGACATTGC CAAGGACAAG
CTGGAAAGCC TGGGGGCCAA GGTTGCCGGT TCCGTTTCCG GCAAGACCCA CTGCGTGGTG
GCAGGGCCGG GGGCAGGTTC CAAGCTGGCC AAGGCTGCTG AGCTGGGTGT GAAGGTACTG
GACGAAGATG CCTTCGTCAC ATTCCTGGCC GAACAGGGCA TAGCGGTCTA G
|
|---|
| Protein sequence | MTAETRILEL RAELDQHNYR YYVLDEPSVP DAEYDRLFNE LKALEAEHPH LVTPDSPTQR
VGGAALAAFS QVRHEVPMLS LGNAFEEADL REFGRRVVEG LDQPGAVDYS CEPKLDGLAV
SLLYRDGQLV QGATRGDGTT GEDISANVRT VRNIPLKLQG KGWPAVLEVR GEVYMSKAGF
DRLNAAQAEA GGKTFANPRN AAAGSLRQLD SKITASRPLE FCCYGVGQLS ESIGDSHIGI
LEQLKAWGLP ISRELKHAAG IEECLAYYRD IGERRNSLPY EIDGVVFKVN SLAAQRELGF
RAREPRWAIA HKFPAMEELT EVLDVEFQVG RTGAVTPVAR LKPVKVAGVT VSNATLHNMD
EIARLGLRIG DTVIIRRAGD VIPQVMQVVL ERRPQDARPV EVPSECPVCG SQVERTQLVK
RSKGKETTSE GAVYRCVGRL ACGAQLKQAI IHYVSRRAMD IDGLGEKSVE QLVDEGLIGS
PADLYKLQFE QVVGLEGFAE VSTQKLLDAI EASKRPSLAR FIYALGIPDV GEETAKVLAR
SLGSLARVQQ ALPQVLTYLP DIGLEVAYEI HNFFEDEHNQ KVIQQLLDSG MQLQDEGELA
AEFAASTTLA GMIAKLDIAS VGPTGAEKLV AKLDSLDKII AADGIDLRQA LAAKQADAVR
EFFKDEANQK LARDIEAQLL AFGMHWSSEK KVAEGLPLAG QTWVLTGTLE RMSRDIAKDK
LESLGAKVAG SVSGKTHCVV AGPGAGSKLA KAAELGVKVL DEDAFVTFLA EQGIAV
|
|---|
| |