| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1186 |
|---|
| Symbol | |
|---|
| ID | 5194387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1336021 |
|---|
| End bp | 1336890 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640585644 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001266531 |
|---|
| Protein GI | 148546429 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.502575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.193359 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCGG CCGTACGTAT TCTGGTGACC CTGTGTGTGG TGGCCCTGGC CGTGTTGGCC
GGCTACCAGC TGTGGCAGTA CTACATGCTC ACCCCATGGA CGCGCGATGC CCGTGTGCGC
GCCGATGTGG TGGTGATTGC GCCTGACGTG TCTGGCTGGG TTCGCGAACT CAAGGTTCAT
GACAACCAGC AGGTCAAGGC TGGCGACTTG TTGATGAGCA TTGACCGCGA GCGCTTCCAG
GCCGCGCTCG ATCAGGCCAG TGCGGTGACC GAGACCCGCG CCCAGCAACT GCGCTTGCGC
GAGCGTGAAG CAGCCCGGCG TACTGCCTTG GGGCCAGAGG CAATCAGTGC CGAGTTGCGT
GAAAACGCCC AGATCAATGC CGCCATCGCG CGTGGTGAGT TGCATGAGGC CGAGGCGCAG
TTGCAGGTGG CCAGGATCAA CCTGGCGCGC AGTGAGGTGC GGGCACCGCG CAGCGGGCAT
ATCACCAATC TGCGTCTGGC CGAAGGCAAT TATGTGAACA CCGGGGAATC GGTGATGGCG
CTGGTGGATG ATTCGACGTT CTACATCCAG GCCTATTTCG AGGAAACCAA GCTGCCGCGC
ATTCGCGTTG GGGACACCGT GAAGGTGTGG CTGATGGGCA CGGGTGAACC GATGCAGGGG
CACGTGGAGA GCATCAGCCG CGGCATCACC GACCGCAACA GCAACCCGGA CAGCCAGTTG
CTGCCGGAGG TAGAGCCGAC CTTCAACTGG GTACGACTGG CCCAGCGCAT ACCTGTGAGG
ATTCGCCTGG ATCAGGTGCC GGAAGGGCTG ACCTTGAGTG CGGGTATGAC GGCGAGTGTG
CAAGTGCATG AGGTCCGCGA CCCGCAGTGA
|
|---|
| Protein sequence | MRAAVRILVT LCVVALAVLA GYQLWQYYML TPWTRDARVR ADVVVIAPDV SGWVRELKVH
DNQQVKAGDL LMSIDRERFQ AALDQASAVT ETRAQQLRLR EREAARRTAL GPEAISAELR
ENAQINAAIA RGELHEAEAQ LQVARINLAR SEVRAPRSGH ITNLRLAEGN YVNTGESVMA
LVDDSTFYIQ AYFEETKLPR IRVGDTVKVW LMGTGEPMQG HVESISRGIT DRNSNPDSQL
LPEVEPTFNW VRLAQRIPVR IRLDQVPEGL TLSAGMTASV QVHEVRDPQ
|
|---|
| |