| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1178 |
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| Symbol | |
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| ID | 5194213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1326514 |
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| End bp | 1328778 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640585636 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001266523 |
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| Protein GI | 148546421 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.578414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGC TGGGGCTGCA ACTGTTCGCC GATCTTCCCG CAACCGGGCG CATCGTCATC
GACTGCCGTC ATGAACCGCT CTTGGTTCTG CTCGCCTATT TCGTTGCTTG CGCGGCCTGT
TTCGCCACCC TCGACATGGC CGAGCGCCAG TCCCACAGCG ACGACCCCAC CGCCCACCGG
CAATGGAACA TGCTCGGAGC CTGCTGCCTG GCAGGCGGCA TATGGGCCAT GCACTTCATC
AGCATGCTGG CCTTTCGGGC CCCGGTAGAA GTGCACTACG ACGTATCCCT GACCATTCTT
TCGCTGCTCA TCGCACTGGG CGTGGCCTGG CTGGCCATGC ACAGCCTCGA ACGCAGCAAC
ATGCGCGCGC ACTATTTCGT GCCGAGCGCA GGGCTGATCG GCCTGGGCAT CATCCTCATG
CATTTTGTCG GCATGGCCGC GATGGAAACG GGTGCCCGCC AGTACTACCA AACCGGCTTG
CTACTTGCCT CTGCCGCCAT TGCCCTGCTC ACCGCCCTGA CCGCGCTGTA CCTGGCCCGC
TACTTGCGCA ATGGCAGCGG CACCCTGTAC CAGGCCATGA AATACGGCGC CAGCCTGCTG
ATGGCGGGCG GCATCGTCGC CACTCATTTC ACCGCGATGT CGGCCATGAC CTTGGTCATC
CCTGCCGATA CCGCACTGCG CCTGCCGTCG GGCGACAACA GCCTGCAACT GGGACTGGGC
ATCGGCTTCA TCACCCTGCT GATCAGTGGC GCCAGCATCA GCGCCGCACT GGCCGACAAG
AAGCTGCAAA GCAAGGAGCA CGACCTGCGC CGGGTCAGCG TACTGCTCAG CCAACTGGAC
CAGGCCCGCG CTTCGCTGCA GCAGGCGGCG CACTATGATG CCCTGACCAA CCTGCTCAAC
CGCCGCGGAT TCAACCAGGT ATTCGCCGAG CGCCTGGTCG AAACTCAGGC CAGCGAAAAC
CGCCTGGCCG TGATGTTCCT CGACATCGAC CATTTCAAGC GCATCAACGA CAGCCTCGGC
CACGACGCCG GTGACGAGCT GCTCAAGGTA ATCGCCCACC ACATCAAGGC CGCTACCCGC
AGCCACGACC TGGTTGCGCG TTTTGGTGGC GACGAGTTCT GCGTGGTCAC CAGCCTGAAC
AGCCGCGACG AAGCCCGCCA CCTGGCCCAG CGCATCATGC AACGGATGAA AGACCCCATC
GACCTGGGCG GACGGCGCAT GGTCATGACC ACCAGCATTG GTATAAGTAT CTTCCCAGAC
GATGGCGGCA CAGCCGAAGA GTTGCTCAAG CATGCCGACC TGGCCCTCTA CCAATCCAAG
GACAACGGAC GCAACAGCCT GAATTTCTTC AATGACAGCC TGAAGGCTCG CGCGTCGATC
GCCTTGCAAC TGGAAGAAGA GCTGCGCCTG GCGCTGCTTG AAGAACGCGG GCTGTGTGTG
CACTACCAGC CGATTTTCGA CCAGCGCAGC GGGCAAGTGG CCAAACTGGA AGCGCTGGTA
CGCTGGCAGC ATCCTCAACA TGGCCTGCTC GGGCCCGACC GTTTTGTCGG CATTGCCGAA
GCCAACGGCC TGATCATCGA CCTGGACCTG TGGGCGCTGC GCCACGCCTG TGCCGACCTG
GCCCACTTAC AGCGCCACGG CTACGACGAG GTCCAGGTCA CGGTCAATTG CTCGGCAGTC
ACCCTTAGCC ACGACGAACT GCCCAACGAA GTTGAAAAGG CACTGTTCCA CGCCGGCCTT
GCGCCGCGCC ACCTGGAGCT GGAAGTGACC GAGAACGCCC TGGTGGGCGA TATCCAGCGC
ACGGTCAGCC TGCTCAAACG CGTCCGGGCC TTGGGGGTGA CACTTTCGAT CGATGATTTT
GGTACCGGCT ACTCCTCACT GGCCTACCTC AAGCGCCTGC CATTGGATGT GCTGAAGATT
GACCGCACCT TTCTGCAGGA TGTACCAGGC AGCCAGAAAG ACCGCGAAAT TGTCCAGGCG
ATCATCGCCA TGGCGCATAC CCTGCACCTG CGGGTAGTCA GCGAGGGCGT GGAAACCGCC
GAACAGCGGG CGTTCCTCGA AAGCCATGGC TGCGACTACC TGCAGGGGTA CCTGTTGGGG
CACCCCGTAC CGCTGGCCGA GTTGCGCCCA CTGCTGGAGC GGTTGCAGCG CCAGAGCGGC
CGGATCACAC CTTGTTGCGG TACAGCTCAA CCAGGGTCGC CGGATCTTTT TGCAGGTAAC
CCTGGCTACC GTGCAAGCGC ATCAGTTGCG CGGCAAGGCC ACTGA
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| Protein sequence | MEWLGLQLFA DLPATGRIVI DCRHEPLLVL LAYFVACAAC FATLDMAERQ SHSDDPTAHR
QWNMLGACCL AGGIWAMHFI SMLAFRAPVE VHYDVSLTIL SLLIALGVAW LAMHSLERSN
MRAHYFVPSA GLIGLGIILM HFVGMAAMET GARQYYQTGL LLASAAIALL TALTALYLAR
YLRNGSGTLY QAMKYGASLL MAGGIVATHF TAMSAMTLVI PADTALRLPS GDNSLQLGLG
IGFITLLISG ASISAALADK KLQSKEHDLR RVSVLLSQLD QARASLQQAA HYDALTNLLN
RRGFNQVFAE RLVETQASEN RLAVMFLDID HFKRINDSLG HDAGDELLKV IAHHIKAATR
SHDLVARFGG DEFCVVTSLN SRDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGISIFPD
DGGTAEELLK HADLALYQSK DNGRNSLNFF NDSLKARASI ALQLEEELRL ALLEERGLCV
HYQPIFDQRS GQVAKLEALV RWQHPQHGLL GPDRFVGIAE ANGLIIDLDL WALRHACADL
AHLQRHGYDE VQVTVNCSAV TLSHDELPNE VEKALFHAGL APRHLELEVT ENALVGDIQR
TVSLLKRVRA LGVTLSIDDF GTGYSSLAYL KRLPLDVLKI DRTFLQDVPG SQKDREIVQA
IIAMAHTLHL RVVSEGVETA EQRAFLESHG CDYLQGYLLG HPVPLAELRP LLERLQRQSG
RITPCCGTAQ PGSPDLFAGN PGYRASASVA RQGH
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