Gene Pput_1008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1008 
Symbol 
ID5191105 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1134333 
End bp1134983 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content63% 
IMG OID640585466 
ProductGntR domain-containing protein 
Protein accessionYP_001266353 
Protein GI148546251 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.19227 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACAG AGCTGACCAA GCGTTCCCTG GTGGAATTGG CGGTAGAGCG CATGCGCGAA 
TGCATCGTGC TGGGCGATTG GCAGGTCGGT CAGCGCCTGC CTACCGAGCC CGAGCTTGCC
TTGCAACTGG GCATTAGCCG TAACACGGTG CGTGAGGCCA TGCGCGTGCT GGCGTTCAGT
GGCCTGGTGG AAATTCGCCA GGGAGACGGC AGCTACCTGC GCACTGCCCA GGACCCGCTG
CAGGCGGTGC ACGCGATGTC CCGATGTACG CTCGAGCAGG CTCGCGAGAC CCGCCATATC
CTCGAGGCGG AAGCCATCGG CCTGGCGGCT TTGCGTCGTA ACGATGCCGA CCTGCAAGCG
CTGAAGGATG CCCTGGAAGG CAGTGCCGGG CACTTTCATG GCGATGTTGA TGCCTATGTC
GCCTGCGATC TGGTCTTCCA CCAGCGGCTG GTCGATGCCG CCCACAACCC GGCATTGAGC
GAGCTGTACC GTTACTTCTC CGGGGTTGTG GCTGCCGCTC TGCAACACAA TATGGCCACC
GTTCCGCGCT GCCAGGCCAC GTTCGACTTG CATGGGCAGA TCCTCGACGC CATCGAGCAA
CGTGACGCTG AACGGGCCAA GCGCCTGAGC CGTACCCTAA TTGAATCCTG A
 
Protein sequence
MNTELTKRSL VELAVERMRE CIVLGDWQVG QRLPTEPELA LQLGISRNTV REAMRVLAFS 
GLVEIRQGDG SYLRTAQDPL QAVHAMSRCT LEQARETRHI LEAEAIGLAA LRRNDADLQA
LKDALEGSAG HFHGDVDAYV ACDLVFHQRL VDAAHNPALS ELYRYFSGVV AAALQHNMAT
VPRCQATFDL HGQILDAIEQ RDAERAKRLS RTLIES