Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1008 |
Symbol | |
ID | 5191105 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1134333 |
End bp | 1134983 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640585466 |
Product | GntR domain-containing protein |
Protein accession | YP_001266353 |
Protein GI | 148546251 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.19227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACAG AGCTGACCAA GCGTTCCCTG GTGGAATTGG CGGTAGAGCG CATGCGCGAA TGCATCGTGC TGGGCGATTG GCAGGTCGGT CAGCGCCTGC CTACCGAGCC CGAGCTTGCC TTGCAACTGG GCATTAGCCG TAACACGGTG CGTGAGGCCA TGCGCGTGCT GGCGTTCAGT GGCCTGGTGG AAATTCGCCA GGGAGACGGC AGCTACCTGC GCACTGCCCA GGACCCGCTG CAGGCGGTGC ACGCGATGTC CCGATGTACG CTCGAGCAGG CTCGCGAGAC CCGCCATATC CTCGAGGCGG AAGCCATCGG CCTGGCGGCT TTGCGTCGTA ACGATGCCGA CCTGCAAGCG CTGAAGGATG CCCTGGAAGG CAGTGCCGGG CACTTTCATG GCGATGTTGA TGCCTATGTC GCCTGCGATC TGGTCTTCCA CCAGCGGCTG GTCGATGCCG CCCACAACCC GGCATTGAGC GAGCTGTACC GTTACTTCTC CGGGGTTGTG GCTGCCGCTC TGCAACACAA TATGGCCACC GTTCCGCGCT GCCAGGCCAC GTTCGACTTG CATGGGCAGA TCCTCGACGC CATCGAGCAA CGTGACGCTG AACGGGCCAA GCGCCTGAGC CGTACCCTAA TTGAATCCTG A
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Protein sequence | MNTELTKRSL VELAVERMRE CIVLGDWQVG QRLPTEPELA LQLGISRNTV REAMRVLAFS GLVEIRQGDG SYLRTAQDPL QAVHAMSRCT LEQARETRHI LEAEAIGLAA LRRNDADLQA LKDALEGSAG HFHGDVDAYV ACDLVFHQRL VDAAHNPALS ELYRYFSGVV AAALQHNMAT VPRCQATFDL HGQILDAIEQ RDAERAKRLS RTLIES
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