| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0485 |
|---|
| Symbol | |
|---|
| ID | 5191650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 564416 |
|---|
| End bp | 565609 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640584938 |
|---|
| Product | elongation factor Tu |
|---|
| Protein accession | YP_001265839 |
|---|
| Protein GI | 148545737 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0050] GTPases - translation elongation factors |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000994987 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0792856 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTAAAG AAAAATTTGA TCGTTCCCTT CCCCACGTTA ACGTCGGCAC TATCGGCCAC
GTTGACCACG GTAAGACCAC TCTGACCGCA GCTCTGACTC GCGTTTGCTC CGAAGTTTTC
GGTTCGGCAA TCGTTGAGTT CGACAAGATC GACTCGGCTC CGGAAGAAAA AGCGCGCGGT
ATCACCATCA ACACCGCTCA CGTTGAGTAC AACTCGACCA TTCGTCACTA CGCTCACGTT
GACTGCCCAG GTCACGCTGA CTACGTGAAG AACATGATCA CCGGTGCTGC CCAGATGGAC
GGCGCGATCC TGGTTTGCTC GGCCGCCGAT GGTCCGATGC CACAAACCCG TGAGCACATC
CTGCTGTCCC GTCAGGTAGG CGTTCCGTAC ATCGTGGTCT TCCTGAACAA GGCTGACCTG
GTAGACGACG CTGAGCTGCT GGAACTGGTC GAGATGGAAG TTCGCGACCT GCTGTCCACC
TATGACTTCC CAGGCGACGA CACCCCGATC ATCATCGGTT CGGCTCGTAT GGCGCTGGAA
GGCAAAGACG ACAACGAAAT GGGCACTACC GCTGTTAAGA AGCTGGTAGA AACTCTGGAC
AGCTACATTC CTGAGCCAGT TCGTGCTATC GACCAGCCGT TCCTGATGCC GATCGAAGAC
GTGTTCTCGA TTTCGGGTCG TGGTACCGTT GTTACCGGTC GTATCGAGCG TGGTATCGTC
CGCGTTCAGG ATCCGCTGGA AATCGTTGGT CTGCGTGACA CCACCACCAC CACCTGCACC
GGTGTTGAGA TGTTCCGCAA GCTGCTGGAC GAAGGTCGTG CTGGCGAGAA CTGCGGCGTT
CTGCTGCGTG GCACCAAGCG TGACGACGTT GAGCGTGGTC AGGTTCTGGT CAAGCCAGGT
TCGGTCAAGC CGCACACCAA GTTCACCGCA GAAGTCTACG TCCTGTCGAA GGAAGAAGGC
GGCCGTCACA CGCCGTTCTT CAAAGGCTAC CGTCCACAGT TCTACTTCCG TACCACTGAC
GTGACCGGTA ACTGCGAACT GCCGGAAGGC GTTGAAATGG TAATGCCAGG TGACAACATT
CAGATGACTG TTACCCTGAT CAAGACCATC GCAATGGAAG ACGGCCTGCG CTTCGCTATC
CGTGAAGGCG GTCGTACCGT CGGCGCCGGC GTTGTGGCCA AAATCATCGA GTAA
|
|---|
| Protein sequence | MAKEKFDRSL PHVNVGTIGH VDHGKTTLTA ALTRVCSEVF GSAIVEFDKI DSAPEEKARG
ITINTAHVEY NSTIRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI
LLSRQVGVPY IVVFLNKADL VDDAELLELV EMEVRDLLST YDFPGDDTPI IIGSARMALE
GKDDNEMGTT AVKKLVETLD SYIPEPVRAI DQPFLMPIED VFSISGRGTV VTGRIERGIV
RVQDPLEIVG LRDTTTTTCT GVEMFRKLLD EGRAGENCGV LLRGTKRDDV ERGQVLVKPG
SVKPHTKFTA EVYVLSKEEG GRHTPFFKGY RPQFYFRTTD VTGNCELPEG VEMVMPGDNI
QMTVTLIKTI AMEDGLRFAI REGGRTVGAG VVAKIIE
|
|---|
| |