| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0395 |
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| Symbol | |
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| ID | 5194671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 457459 |
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| End bp | 458736 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640584841 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001265752 |
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| Protein GI | 148545650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTTCGTT TTAATGCTGT TCGCGCAAGC CACTTCCTGC CGTCGCTGTT CTTGTTGCTG
GCAGGGCTCG CCGCAGCCTA TGTGAGAGAC CTCAGCGTCT TTTTCACATC GCTGTTCAAT
GTCCTGCCTA CCTTGGTTCT ACTGCTGGGC GGCGCCTACT GTGCGGTTTA CCGCCGCCAG
CGTGAGCTGT TCCTGATGCT GACGGTGTAC ATCGCCTACT TCCTGCTCGA TACCCAGACT
GACTTCTACC GTGATCATGG CCGCGTGCGT GAGGACGCCG CGGTGATTTT CCACCTGGTC
TGCCTGTTGC TGCCGGCGCT GTTCGGGCTG TACGGCGCCT GGCAGGAGCG CACGCACCTG
CTGCAGGACC TGGTCGCCCG CGGTGCCGTG CTGTTTGCCG TGGGCAGTGT GGCGGTGGCC
CTCCAGCAAA GCTACCCCGA GGCGTTGCTG ACCTGGTTGG CGGAGATCCG CTGGCCGGCT
TTGCATGGCC ACTGGATGAG CCTGATCCAG ATGGTCTACC CACTGTTCCT GGGTGTGTTC
ATTCTGCTGG TGGTGCAGTA TCTGCGTGCA CCCCGGCCGC TGCACGCTGC GCAGTTGATC
GGCCTGCTGG GCATTTTCTG GATGCTGCCG CAAACCTTCA TCCTGCCGTT TACCTTGAAC
ATCATGTGCA GCCAGGTAAT GTTGATGATC GCCGCAGCCG TGGCGCACGA GGCTTATCAG
ATGGCCTTCC GTGACGAGCT GACTGGCCTG CCGGGGCGTC GTGCGCTGAA CGAGCGCATG
CAGCGCCTGG GGCGTAACTA TGTGATCGCC ATGACCGATG TCGACCACTT CAAGAAATTC
AACGACACCC ACGGCCACGA TGTCGGTGAC CAGGTGCTGC GGTTGGTCGC CAGCCGCTTG
GTCACCGGCG GTGGCCGCGC CTACCGTTAT GGCGGGGAAG AGTTCGCCTT GGTGTTCGCC
GGCAAGACTG CCGCGGAATG CGTGCCGCAT GTGGAGGCCG TGCGTGAAGT GATCGCCAAT
TACGTGATGC ACCTGCGCGA TCAGCACAAC CGCCCGCAGG ACGATACCGC CGGGCGCCAG
CGCCGGGCGG GCAGCGCCGG CGGCACGGTC TCGGTCACCA TCAGTATCGG CGTGGCCGAG
CGCCAGGCCG ATCATCGCAA CCCCGAGGCG GTGCTGAAAT CCGCCGACCA GGCGCTTTAC
AGTGCCAAAG GCGCGGGGCG AAATTGTGTC ATGGTGCATG GGCGACAATC ACTGCGGGGG
GCAGTGCGCA CGGCGTGA
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| Protein sequence | MFRFNAVRAS HFLPSLFLLL AGLAAAYVRD LSVFFTSLFN VLPTLVLLLG GAYCAVYRRQ
RELFLMLTVY IAYFLLDTQT DFYRDHGRVR EDAAVIFHLV CLLLPALFGL YGAWQERTHL
LQDLVARGAV LFAVGSVAVA LQQSYPEALL TWLAEIRWPA LHGHWMSLIQ MVYPLFLGVF
ILLVVQYLRA PRPLHAAQLI GLLGIFWMLP QTFILPFTLN IMCSQVMLMI AAAVAHEAYQ
MAFRDELTGL PGRRALNERM QRLGRNYVIA MTDVDHFKKF NDTHGHDVGD QVLRLVASRL
VTGGGRAYRY GGEEFALVFA GKTAAECVPH VEAVREVIAN YVMHLRDQHN RPQDDTAGRQ
RRAGSAGGTV SVTISIGVAE RQADHRNPEA VLKSADQALY SAKGAGRNCV MVHGRQSLRG
AVRTA
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