| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4819 |
|---|
| Symbol | |
|---|
| ID | 5198016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5307705 |
|---|
| End bp | 5308883 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640584376 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001265294 |
|---|
| Protein GI | 148557712 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.749552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAG GTCGAATGAC GAAGACGGGT AACGCCGCGA CCGGCGCCGA CATGGCGCCG
CCGATCCAGT CGCTCGGCGA CGTGGAACTG TTCTGGCAGC AGACGCAGGG CTGGATCGCC
AGCCATTATC TGAGCATCGC CATCGCCTGC GCGAGCGGCG CGCTGATCAT CGCGCTGCTC
TACGGCCTGC GCATGCTCGG CACCCGGCTG TGCCGGCGCG AACATCTCGG CCACTGGCCG
CGCATCGTCG GCCGGGCGAT CGCGCGCACC AACCTCTTCT TCATCGTCAT GCTCGCGGCC
CGGCTGGTCA GCGGCTATGC CACCCCACCC GCGGTCGTCG CCGGGACGAT CGGCTTCCTG
TTCACCGTCG CGACCGCGGT GCAGGCGGCC TTGTGGGTCC GCGAGCTGGT CATCGGCATC
GTCGAGTATC GCGCCGGGGA GGAGGACAGC GGCTCGTCCA CGCTCGGCTC GGCGATCGGC
ATCATCCGCC TGCTCGTCAC TGCGGTCTGC TTCATCGTCG CGACCCTGCT GATCCTCGAC
AATATCGGGG TCAACATCAC CGGCCTGGTC GCCAGCCTCG GCATCGGCGG CATCGCCATC
GGCCTTGCCG CGCAGGGAAT CTTCTCCGAC CTGTTCGCCA GCCTCGCGAT CATCTTCGAC
AAGCCGTTCC GGCGCGGCGA CACCGTCAAA TGGGACCTGA CCACCGGCAC GGTCGAATCG
ATCGGCCTCA AGACCACCCG CGTCCGCTCG ACGACCGGCG AGGAGGTGGT GATCTCCAAC
ACCAACCTGC TCAACAAGGA ACTGCGCAAC CTGGCGCATA CGCTGCGGCG ACGGGCGACG
CTGATGCTCA GCGTCACCTA TCAGACGCCG CCCGAGGTCT GCCGCCGCAT CCCCGACATG
GTGAAGGCGA TCGTCACGGC CCATGACAAG GCGGTGTTCC TCCACTGCTG CATGGTCAAT
TTCGCGCCGT CGAGCCTCGA CTATGAGCTG TTGTTCGACG TGCTCGACGA GGATGGAGAA
GTCTTCAACA GCGCGCGCCA CGACATCTGC ATCACGATCC TGGAAAGCTT CGCGAAGCAG
GGGATCAGGT TCGCCTATCC GACCCAGACG ACCTTCACCG CGGCGCCGGA CGGGACGATG
ATCATGCCTT ATGCGGAAGC GCCGACGCCG GCGGCCTGA
|
|---|
| Protein sequence | MMEGRMTKTG NAATGADMAP PIQSLGDVEL FWQQTQGWIA SHYLSIAIAC ASGALIIALL
YGLRMLGTRL CRREHLGHWP RIVGRAIART NLFFIVMLAA RLVSGYATPP AVVAGTIGFL
FTVATAVQAA LWVRELVIGI VEYRAGEEDS GSSTLGSAIG IIRLLVTAVC FIVATLLILD
NIGVNITGLV ASLGIGGIAI GLAAQGIFSD LFASLAIIFD KPFRRGDTVK WDLTTGTVES
IGLKTTRVRS TTGEEVVISN TNLLNKELRN LAHTLRRRAT LMLSVTYQTP PEVCRRIPDM
VKAIVTAHDK AVFLHCCMVN FAPSSLDYEL LFDVLDEDGE VFNSARHDIC ITILESFAKQ
GIRFAYPTQT TFTAAPDGTM IMPYAEAPTP AA
|
|---|
| |