| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4733 |
|---|
| Symbol | |
|---|
| ID | 5199112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 5205598 |
|---|
| End bp | 5207364 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640584288 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_001265208 |
|---|
| Protein GI | 148557626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACTC CCGTCCTCAA CGTCGCCCGT TCGATCCTCG GCCAGCCCTG GCATTGGCGG
GGCGGCACGG TCGACGGGAT CGACGCGGGG TTCGAGGCGG ACGACCTGAT CACCCAACTC
CTGCTCGCGC GCGGATGCCC GCGCGAGGCG GTCGAGCTGC ACCGGCTGCC GACGATCCGC
GGCTTCATGC CCGATCCGTC GATCTTCCGC GACATGGACG AGGCGGCGGC GCGGCTGGCC
GACGCGGTCG AGCATGGCGA GCCGGTCACC ATCTTCGGCG ATTATGACGT CGACGGCGCG
ACCTCGGCGG CGCTGCTGAT CCGGCTGTTG CGCGACCTGG GGCTGAGGGC GGGGTTCTAT
ATCCCCGACC GGCTGATGGA GGGCTATGGC CCCTCGGGCG AGGCGCTGCT GAAGATCGGG
GAGGGCGGCA CCCGGCTGAT CGTCACCGTC GATTGCGGCG CGCAGGCGTT CGAGGCGCTG
AAGCTCGCCA GCGACGCCGG CATCGACGTG ATCGTCGTCG ACCATCATAA ATGCGCCGCC
GAGCTGCCGC GCGCCTTCGC GCTGGTCAAC CCGAACCGCC TCGACGAGGG CGAGGGCGCG
GCGCACGGCC ATCTCGCGGC GGTCGGCGTC GCCTTCCTGC TCGGCGCGGC GCTGCTGAGG
GTGCTCAGGG CGCGCAACTT CTTCGCGACC CGGGCCGAGC CCAAGCTGAT CGACCTGCTC
GACATCGTCG CGCTCGGCAC CGTCGCCGAC GTGGCTTCGT TGCGCGGGCT CAACCGGGCG
TTCGTCGCGC AGGGGATCAA GGTGATGGCG GGCCGCCGCA ACATCGGCCT CGCCGCGCTG
ATCGAGGCGT CACGGCTCGA ACGGGCGCCG ACCTGCACCG ACCTCGGCTT CGCGCTCGGC
CCCCGGATCA ACGCCGGCGG CCGGGTCGGC AAGTCGGACC TCGGCGTCCG CCTGCTCACC
ACCGAGGATC GCGACGAGGC GCGGACGATC GCGGCCGAGC TCGACCGCCT CAACGAGGAG
CGCCGCGCGA TCGAGAAGGC GGTGCAGGAG GAAGCGGAGA CGCTGTCCGG CTCGCAGGGC
AACCGATCGG TCGCGGTGGT CGCGGCGGGG GGCTGGCATC CCGGCGTGAT CGGGATCGTC
GCCGGCCGCC TGAAGGAGAA GCTCGGCCGT CCCGCGCTGG TGATCGCGCT CGACAAGGAC
GGCGTCGGCA AGGGATCGGG CCGCTCGATC GGCGGGGTCG ATCTCGGCGC GGCGATCCTG
GCCGCCAAGG ACATGGGCCT GCTGGTCGCG GGCGGCGGCC ATGCGATGGC GGCGGGGGTC
ACGGTGGCCC CCGGCGGGGT CGACGCGCTC GCCGATTTCC TGGAGGAACG GCTGGCGAGC
GACGTCGCCA GGGCCCGCGA CGATCGCGCG CTGCTGCTCG ACGCGGTGGT GGCGCCGGGC
GGCGTCACCC CGTCGCTGGT CGAGGCGCTG GAGGCGGGCG GCCCCTATGG CGCCGGCTGG
CCCGCGCCGC GCATAGCCGC GGGCGCGGTG CGGGTGATCA AGGCCGACGT GGTGGGGCAG
GGGCATGTCC GCACCATCGT CTCGGGCCGC GACGGCCGCT CGATCAAGAC GATCGCCTTC
CGCGCCGCCG ACAGCGCGCT CGGCCAGGCG CTGCTCGGCG CCGGCCCCGA CCGCACCCTG
TGGATCGCCG GCCGCCCCAA GGTCGACGAC TGGGGCAGCC GCCCCGCCGC GGAACTCCAT
GTCGAGGACG CCGCCTGGGC CGATTGA
|
|---|
| Protein sequence | MRTPVLNVAR SILGQPWHWR GGTVDGIDAG FEADDLITQL LLARGCPREA VELHRLPTIR
GFMPDPSIFR DMDEAAARLA DAVEHGEPVT IFGDYDVDGA TSAALLIRLL RDLGLRAGFY
IPDRLMEGYG PSGEALLKIG EGGTRLIVTV DCGAQAFEAL KLASDAGIDV IVVDHHKCAA
ELPRAFALVN PNRLDEGEGA AHGHLAAVGV AFLLGAALLR VLRARNFFAT RAEPKLIDLL
DIVALGTVAD VASLRGLNRA FVAQGIKVMA GRRNIGLAAL IEASRLERAP TCTDLGFALG
PRINAGGRVG KSDLGVRLLT TEDRDEARTI AAELDRLNEE RRAIEKAVQE EAETLSGSQG
NRSVAVVAAG GWHPGVIGIV AGRLKEKLGR PALVIALDKD GVGKGSGRSI GGVDLGAAIL
AAKDMGLLVA GGGHAMAAGV TVAPGGVDAL ADFLEERLAS DVARARDDRA LLLDAVVAPG
GVTPSLVEAL EAGGPYGAGW PAPRIAAGAV RVIKADVVGQ GHVRTIVSGR DGRSIKTIAF
RAADSALGQA LLGAGPDRTL WIAGRPKVDD WGSRPAAELH VEDAAWAD
|
|---|
| |