| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4649 |
|---|
| Symbol | |
|---|
| ID | 5198076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5113263 |
|---|
| End bp | 5114210 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640584203 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001265124 |
|---|
| Protein GI | 148557542 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.235656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGAT CGATATCCCA GCGGAATGGA TCGATGGACC TGCGGCATTT GCGCTATTTC
CTTCGTGTGG CCGACGAGAT GCATTTCGGC CGCGCGGCCC AGCGGCTGGG CATCTCGCAA
CCGCCGCTCA GCAAGCAGAT CAGGGCGCTG GAGGACGAGC TGGGCGTAAA GCTGTTCGAC
CGCACCAGCC GGCGCGTCCG CCTGACCGAG GCCGGGCGGC TGTTCGAGCC GGAGGCGCGC
CGCGCGCTCG AACAGGCCGA TCGCGCGGCC CGGATCGCGC GGCTCGCCCA TAGCGCGGAG
ATCGGCCGGC TCGGCCTGGG CTTCACCACC TCCGGGCCGT TCATCCCGTT CGTCGCGCGC
GCGCTGCACC GCTTTCGCCG GACCTATCCC GATGTCGAAC TGATCCTGCG CGAACAGGGG
CGCGACGAGC AGATCGAGGG CGTGCTCAGC CGCCAGCTCG ATATCGGCAT CGTCCGCGAC
TACCGGACCC CGGTCCTGCC CGACGGCGTG GTGGCGCAAT GCCTCCAGCA GGAGGAGATG
ATCCTGGCGG TGCGCGACGA CCATTGGCTC GCCCGCCGCC CGCAGCCGCC CCGGATCGCC
GACCTGCGCG ACGAGCCGCT GGTCCTCTAC GGCCCGCCCA ACGGCACCGG CTTCACCGAG
CATTTCTTCG CGCTGTGCGA GGAGGCCGGA TTCGTGCCGA AGATCGCGCA TGAGGCGCGC
AGCCTGGCGA CGCTGCTCGG CCTCGTCTCG GCCGGCTTCG GGCCGACCAT CATCGCCCAG
TCGATGGCGC GGCTGCACGT CGACAATGTC GTCAACCGCT CCTTCGCCGC GCCCAGCCCC
AGCTCGCTAT GGCTCGTCCA TGGCGAGGAG CTGTCGCCGA CCGGCGCGGC GTTCCGCCGG
ACCATCCTGG AGGAGCGCGA CGGCGAGGCC GAGGCCGGTG CCGCATGA
|
|---|
| Protein sequence | MPRSISQRNG SMDLRHLRYF LRVADEMHFG RAAQRLGISQ PPLSKQIRAL EDELGVKLFD
RTSRRVRLTE AGRLFEPEAR RALEQADRAA RIARLAHSAE IGRLGLGFTT SGPFIPFVAR
ALHRFRRTYP DVELILREQG RDEQIEGVLS RQLDIGIVRD YRTPVLPDGV VAQCLQQEEM
ILAVRDDHWL ARRPQPPRIA DLRDEPLVLY GPPNGTGFTE HFFALCEEAG FVPKIAHEAR
SLATLLGLVS AGFGPTIIAQ SMARLHVDNV VNRSFAAPSP SSLWLVHGEE LSPTGAAFRR
TILEERDGEA EAGAA
|
|---|
| |