| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4521 |
|---|
| Symbol | |
|---|
| ID | 5196212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4967881 |
|---|
| End bp | 4969851 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640584074 |
|---|
| Product | membrane-like protein |
|---|
| Protein accession | YP_001264997 |
|---|
| Protein GI | 148557415 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4907] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.180216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTCC TGTTCGCGGT CTGGCTGGCG ATCGCCGGCT GGATGCTGCC GGCCGCGGCG
CAGGCGATCG ACGATCCGGC CGCCCTGGTC GCGGCCTATG AGAAGACCCA GGGGCAGGAA
CGCATCCTCG CCTTCACCAG CGACGTGACG GTCGCGCCGA GCGGCGACTA TGACGTGACC
GAGACGATCC GCGTCGTCTC GCTCGCCGAC CGGATCAAGC ACGGCCTCGA ACGCGACTTT
CCGACCAGCT ACCGCAACCG GCTGGGCCAG AAGACCCGCG TCTCGTTCGA CGTGCTCGCG
GTCAGCCGCG ACGGCCGGCC CGAGCATTAT GAGCTGATCG ACCTCGACAA CGGCGTGCGG
GTGCGGATCG GCGAGGCGGA GACGCTGCTG TCGCCCGGCG AGCATGTCTA TGTCCTCCAT
TACCGGACGA GCCGGCAGAT CGGCTATCGT GACGGCTATG ACGAGATCTA TTGGAACGTC
ACCGGCAATG ACTGGGTCTT TCCGATCGAC ATGGCGGAGG CGCGGATCAC CCTGCCGTCG
CCGGCGCGTT TCGGCGAGCG CGCCGTCTAT ACCGGCCCCG ACGGATCGAC CGCGCACGAC
GCTGCGGTGT TCGAGGAGCG GCCGGGCTTC ATCCATTTCC GCACCACCGC GCCGCTCGAT
TCCTATAGCG GCCTGACCGT CGCCGCCGCC TTTCCCAAGG GCGTGCTGGA GACGCCGAGC
CGGGCGCGCC GCTTCGGCTG GTGGCTGTCC GACTGGGGGC CGCTCGTGGC GGGGCTGGCG
GCGCTCGCGG CGCTGCTCGG CTATTATTTC TACGCCTGGC TGCGCGCGGG GCGGGGGCCG
CGCCGGGGCA CCATCGTCCC GATCTTCGCG CCGCCCGACG ATCTCAGCGC CGCCGCCTGC
CGCTATATCC GCCGCATGGG CGACGACAAT CGGGGCTTCA CCGCCGCGAT CATCGACCTG
GCGGTGCGCG GCCATATCGG CATCACGCGC GAGGATGGCG GCTGGCTGTC GCGCGACCGC
ACCACGCTCG AACGGCGGCA GGGCGGCAGG CCCGCGCCGG CGCCCGAGAT CGCGATGCGC
GACACGCTGC TGCCCTCGGC CAGCAGCCGG ATCGAGCTGA AGCAGGATAA TCACGGCACT
CTCCAGGCCG CCCGCGCGAA GCTCGCCAAG GGGCTGGAGG ATGCTTATTC GGGGCGGCTG
TTCGTCAGGA ACGGGGTCTG GGCCGTGGTC GGCCTGCTCG CCATTCCGGC GGCGATCCTG
CTGGTCACGA CCTTCGCGCT GCTCGTCCAC CAGGGCGACG TCGCGACCGG CGTCCTCACC
ATGCCGTTGC TGGGCGGGCT TTCGTTGCTC GCCGTCTGGG GCTGCCACAA GCTGACCCAG
GGCAAGGGCT GCGTCGTCGT CCTCGCCTGG CTCGGGCTGA TCGCGGCGGT GATGATCGCC
TTCATGTGCA CCTTCGGCTC GGTCGGCCTC GCGCTCAGCG ACGGCGCCTG GCCGGTGCTG
CTGCCGCTCG CCGCGCTGCC GCTGGCGATC ACCGCCTTCC GCTGGATGTA CGCGCCGACC
GTCGAGGGCC GGGCGGTGAC GGACCGGATC GAGGGCTTCC GCCACTATCT GGGCATCACC
GAGGAGGAGC GGCTCGACGC GCTGCACCCG CCGGAAAAGA CCCCCGAGCT GTTCGAGCGC
TATCTGCCCT ATGCGATCGC GCTCGACGTC GAGAATCGCT GGGCCGACAA ATTCGCGGCG
GTGCTGGCGG CGGCCGCCGC CGCCGGGACG GTGGCGCACA CCGCGAGCTG GTATTCGGGC
GGCGGCAATG TCTGGGACGA TCCGGGCGGC TTCGCCAGCA GCGTCGGCTC CTCGCTGGCC
AGCACCATCT CCTCCGCCTC GACCTCGCCG AGCAGCAGCA GCAGCGGCGG GTCCTCCGGG
GGCGGATCGT CGGGCGGCGG CGGGGGAGGC GGCGGCGGGG GCGGCTGGTA G
|
|---|
| Protein sequence | MRVLFAVWLA IAGWMLPAAA QAIDDPAALV AAYEKTQGQE RILAFTSDVT VAPSGDYDVT
ETIRVVSLAD RIKHGLERDF PTSYRNRLGQ KTRVSFDVLA VSRDGRPEHY ELIDLDNGVR
VRIGEAETLL SPGEHVYVLH YRTSRQIGYR DGYDEIYWNV TGNDWVFPID MAEARITLPS
PARFGERAVY TGPDGSTAHD AAVFEERPGF IHFRTTAPLD SYSGLTVAAA FPKGVLETPS
RARRFGWWLS DWGPLVAGLA ALAALLGYYF YAWLRAGRGP RRGTIVPIFA PPDDLSAAAC
RYIRRMGDDN RGFTAAIIDL AVRGHIGITR EDGGWLSRDR TTLERRQGGR PAPAPEIAMR
DTLLPSASSR IELKQDNHGT LQAARAKLAK GLEDAYSGRL FVRNGVWAVV GLLAIPAAIL
LVTTFALLVH QGDVATGVLT MPLLGGLSLL AVWGCHKLTQ GKGCVVVLAW LGLIAAVMIA
FMCTFGSVGL ALSDGAWPVL LPLAALPLAI TAFRWMYAPT VEGRAVTDRI EGFRHYLGIT
EEERLDALHP PEKTPELFER YLPYAIALDV ENRWADKFAA VLAAAAAAGT VAHTASWYSG
GGNVWDDPGG FASSVGSSLA STISSASTSP SSSSSGGSSG GGSSGGGGGG GGGGGW
|
|---|
| |