| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4432 |
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| Symbol | |
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| ID | 5198395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4879968 |
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| End bp | 4881860 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640583984 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001264908 |
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| Protein GI | 148557326 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.21488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGACC AATCGAATTT CGACGCGCAG GCGACCGAGC AGCGCTATCA GCTCCTCGTC
AACGCGGTCA GCGATTATGC CATCTACATG CTCGACCCGA CGGGCCATAT CCTGACGTGG
AACGCCGGCG CCCGGCGCTT CAAGGGCTAT GTTGCCGAGG AAGTCATCGG CGAGCATTTC
TCCCGTTTCT TCACGCCCGA GGACCGTGCC GCCGGCGTCC CCCAGACCAT GCTCCGCACC
GCGTTCGAGG AAGGACGCTT CGAAGGCGAG GGCGAACGCA TCCGCAAGGA CGGCAGCCTG
ATCTGGGTCC ATGTCGTCAT CGATCCGATC CTGGCCGAGG ATGGCGAGTT GCTCGGCTTC
GCCAAGATCA TCCGCGACAT CACCGAGCGG CGCGCGGCCG ATCGCGCGCT CTTCGTCGCC
GAACAGCGCT TCAGCCTGCT GGTCCAGAGT GTGCAGGACT ATGCGATCTA CATGCTCGAC
CTCGAGGGAC GGGTCACCAA CTGGAACGCC GGCGCGCAGG CGATCAAGGG CTACCGTGCC
GACGAGATCG TGGGTGCGCA TTTCTCGCGC TTCCATACCG AGGAGGATCG CATCCGCGGC
GAGCCGGCCC TGGCGCTCGA AACCGCGCTT CGCGAAGGCC GCTACGAACG CGAGGCCGAG
CGTGTCCGCA AGGACGGCTC GCGCTTCTGG GCGCATGTCG TGATCGATCC GATCCGCGAC
GAAAGCGGGA CGCTGATCGG CTTCGCCAAG ATCACCCGCG ACATTTCCGA GAAGCGCCGC
GCGCAGGAGG AACTGGAACA GGCGCGCGCG GCCGTCTTCC AGTCGCAGAA GATGCAGGCC
CTCGGCGAAC TGACCGGTGG CATCGCGCAC GACTTCAACA ATCTGATGAC GGTGATCCGC
GGCTCGGCCG AACTGCTCCA GAAGGAGGAT CTCGCCCCCG AGAAGCGCCG CCGCTACGTT
CGCGCGATCA CCGAGACCGC CGACAAGGCG ACCGCGCTCA CCACCAAGCT GCTCGCCTTC
GGCCGGCGCC AGTCGCTCAA GCCCGAGGTG CTCGATCCCG GCAGCCGCCT CGACGCCTTC
GGCGAGGTCC TCGCCCGCAC CCTCGGCAGC CCGATCGAGG TGCGGCTCGA TCTCGCGCCC
GATCTATGGC CGATCGAGGC CGACGCCGCC GAACTAGAAA CCGCGCTCCT CAACGCCGCG
TTCAACGCCC GCGATGCCAT GCCGGGCGGC GGTAGGCTCA CCATCTCCGC CCGCAATGTC
GTGGACGAGC ATGCCGTGCG CATCGCCATC ACCGACAGCG GCCAGGGGAT TCCGGCGGAG
ATGCTCGAAC GGGTGTTCGA TCCCTTCTTC ACGACGAAGC CGGTCGGCAA GGGGACCGGA
CTCGGCCTCA GCCAGATCCA CGGCTTCGCC GCCCAGACGG GCGGCCGGGC CGAGATCGCG
TCCCGGCTCG GCCTCGGAAC CACCGTCAGC CTCGTCCTCC CGCGCACCGA TCGGCAACCG
GACAATCGCG CTGCGGTACG CTCGGCGATC GCCAATTGGG AAAGGCTCGA CGTCCTCCTT
GTCGAGGACA ACGACAATGT CCGCCAGTTC GCCCGCTCGA TGCTGCACGA ATTGCGCGCG
GACGTCACCG ACGTCGAAAG CGCCGAGGCC GCGCTCGACC TTCTCGGGCG GCATCATTTC
GACCTGGTCT TCTCCGACAT CGTCATGCCG GGCATGAGCG GCCTCGACCT CGCCCGCCGC
CTGCGCAGCA CCGCGCCCGA CCAGCGCGTC CTGCTCGCCA CCGGCTACAG CCGCGAGGTC
GCTGGCGGCG AGGCGGCCGG CTTCCACATC GTCCAGAAAC CCTATGGCGC GGAATCGCTC
ACCGCGGCGA TCTCGCTCGC GCTGGCGAAC TGA
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| Protein sequence | MDDQSNFDAQ ATEQRYQLLV NAVSDYAIYM LDPTGHILTW NAGARRFKGY VAEEVIGEHF
SRFFTPEDRA AGVPQTMLRT AFEEGRFEGE GERIRKDGSL IWVHVVIDPI LAEDGELLGF
AKIIRDITER RAADRALFVA EQRFSLLVQS VQDYAIYMLD LEGRVTNWNA GAQAIKGYRA
DEIVGAHFSR FHTEEDRIRG EPALALETAL REGRYEREAE RVRKDGSRFW AHVVIDPIRD
ESGTLIGFAK ITRDISEKRR AQEELEQARA AVFQSQKMQA LGELTGGIAH DFNNLMTVIR
GSAELLQKED LAPEKRRRYV RAITETADKA TALTTKLLAF GRRQSLKPEV LDPGSRLDAF
GEVLARTLGS PIEVRLDLAP DLWPIEADAA ELETALLNAA FNARDAMPGG GRLTISARNV
VDEHAVRIAI TDSGQGIPAE MLERVFDPFF TTKPVGKGTG LGLSQIHGFA AQTGGRAEIA
SRLGLGTTVS LVLPRTDRQP DNRAAVRSAI ANWERLDVLL VEDNDNVRQF ARSMLHELRA
DVTDVESAEA ALDLLGRHHF DLVFSDIVMP GMSGLDLARR LRSTAPDQRV LLATGYSREV
AGGEAAGFHI VQKPYGAESL TAAISLALAN
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