| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4371 |
|---|
| Symbol | |
|---|
| ID | 5198527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4825156 |
|---|
| End bp | 4826742 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583923 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001264847 |
|---|
| Protein GI | 148557265 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGATC TGGGGGACCG GCCCGCCTCC TTCAACTTCA CCCGCGACGT CATGGGGCGC
TGGGCCGAGC TGCGGCCCGA CGACCCCGCC ATGATCTGGA CCGATCCCGC CGGAACGGTG
ATCGAGCGCA GCTTCGCCGA GATGGCGGTC GCCGCGTCCC GCGCCGCGGC GGTGCTGACG
GAAGCCGGAG TGGGGCGGGG CGACACCGTG CTGATCCTGC TCAACCGCGA GATCGAATGG
TGGGAACTGA TGCTCGGCTG CATCGCGATC GGCGCGATCG CCTCGCCGGG CACGACCCAG
CTTATGGCCA AGGACATCGC CTATCGCCAC CAGGCCGCCG CCGCGCGCTG CGTGGTGGCG
AGCGGCGAGA TGGCGGAGCG GGTCGACGCG GCGCTGGCCG GGGAGGACGT CGCCCGCCTG
CACGTCGGCG GACCGCGTCC GGGCTGGATC GACCATGCCG AGCGGCGGGC GGCGGCGACG
CCGATCGCGG CGGCGGCCGA CACCGGCTTC GACGAGGATG CGCTGTGCTA TTTCACCAGC
GGCACCACCG GCCAGCCGAA GATGACGATC CACACGCACG GCTATATGCT CGCGCATCGC
ATCACCGGCT CCTACTGGCT CGACCTCAAG CCCGGCGACC TGCACTGGAA CCTGTCCGAC
ACCGGCTGGG CCAAGGCGGC GTGGAGCAGC CTGTTCGCGC CCTGGCTGAT GGGGGCGACG
ATCTTCGTCC ACCACTCGTC CGGCTTCGAT CCGGTCGCGA CGCTCGACCT GCTCGAACGC
ATGCCGGTGA CGACGCTGTG CGCGCCGCCG ACCGCCTATC GCATGTTCGT CCGCAGCGAC
CTGACCGGCC GCCGCTTCGA CACTCTGCGC CATTGCGTGA GCGCGGGCGA GCCGCTCAAC
CCCGAGGTGA TCGACCTGTG GAAGGCGGCG ACCGGCCGCG ACATCCATGA CGGCTACGGC
CAGACCGAGA CGGTGCTGCT CTGCGCCAAC CGGACGGGCG CCGCACGGCA GGGATCGATG
GGGCGGCCCG CGCCCGATTT CGACCTGGCG GTGATCGACG GGGAGGGGAA GCGGCTTCCC
GCCGATGCCG AGGGCGACGT CGCGCTCCGC ATCGCGGAGG GGCATCCGCC CGGCCTGTTC
GCCCGCTACC GCGACGATCC GCAACGGACC GCCGATACGA AGCGCCACGG CTGGTACCTG
ACCGGCGACC GGGCGATCGT CGATGCCGAC GGCTATTTCT GGTTCGTCGG CCGGTCGGAC
GACGTGATCC TGTCGTCAGG CTATCGCATC GGTCCGTTCG AGGTGGAGAG CGCGCTGTTC
GAGCATCCCG CCGTCGCCGA GAGCGCGGTG GTGTCGAGCC CCGATCCGAC CCGCGGCGAG
GTGGTGAAGG CGTTCGTCGT CCTCGCCGCC GGGTTCGAGC CGTCCGACGC GCTGGTCGGG
ATGCTCCAGG ACCATGTGAA ATCAACTACC GCTCCCTATA AATATCCCCG TAAGATCGAA
TTCGTCGCGA GCTTGCCGAA AACGGTGAGC GGCAAGATCC GCCGCAAGGA GCTGCGCGAT
CGCGAATGGG AGAGGGGAGC TGCATGA
|
|---|
| Protein sequence | MLDLGDRPAS FNFTRDVMGR WAELRPDDPA MIWTDPAGTV IERSFAEMAV AASRAAAVLT
EAGVGRGDTV LILLNREIEW WELMLGCIAI GAIASPGTTQ LMAKDIAYRH QAAAARCVVA
SGEMAERVDA ALAGEDVARL HVGGPRPGWI DHAERRAAAT PIAAAADTGF DEDALCYFTS
GTTGQPKMTI HTHGYMLAHR ITGSYWLDLK PGDLHWNLSD TGWAKAAWSS LFAPWLMGAT
IFVHHSSGFD PVATLDLLER MPVTTLCAPP TAYRMFVRSD LTGRRFDTLR HCVSAGEPLN
PEVIDLWKAA TGRDIHDGYG QTETVLLCAN RTGAARQGSM GRPAPDFDLA VIDGEGKRLP
ADAEGDVALR IAEGHPPGLF ARYRDDPQRT ADTKRHGWYL TGDRAIVDAD GYFWFVGRSD
DVILSSGYRI GPFEVESALF EHPAVAESAV VSSPDPTRGE VVKAFVVLAA GFEPSDALVG
MLQDHVKSTT APYKYPRKIE FVASLPKTVS GKIRRKELRD REWERGAA
|
|---|
| |