Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4282 |
Symbol | |
ID | 5199262 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4723081 |
End bp | 4725300 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583836 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_001264760 |
Protein GI | 148557178 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.030658 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.745652 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAAAT CTGTTGTGAC CAAGTGGATG CTGCTGGCGG GCGTCGCCCT GAGCGCGGGA AGCGCCCAGG CCGAGCAGGC GGCTTCCGAA GCGGGCCGGG CGGTGGACGA CGCCGCGTCG AGCGGCGCGA CCGGCGATAT CGTGGTGACG GCGCTGCGCC GCGAGACCAC CTTGCAGAAG ACGCCGGCGG CGGTCGCGGC CATCTCCGGC GAGGAGCTGC AGGCGCGCGG CATTTCCGAC ATCCAGGATC TCGCCGCCGC GGTGCCCAGC GTGTCCTTCG GGCAGACGAT CGGGCAGGCG CACATCGCCG TGCGCGGCAT CGGTTCGGAC GTCGTCACCG CCGGCCAGGA CCCGCGCGTC GCCTTCTACC AGGACGGCGT CTATATCGCC CGGCCGGGCG CGCAGCTCGG CGGGATGTTC GACGTCGATC GCGTCGAGGT CCTGAAGGGG CCGCAGGGCA CGCTCTACGG CCGCAACGCC ACCGGCGGCG CGGTCAGCGT GGTCAGCCGC AAGCCGACCG ACACGCTGGA GGGCTATGTC CGGACGGGCT ATGGCAATTA CAATGCTGTC ACCCTCGACG GCGCGATCTC CGGGCCGATC GCGGAGACGC TTACCGCGCG GATCGCCGGG CATTTCGAGC ATCGCGACGG CTATGGCAAG AACCTGGTCA CCGGCAAGGA CATCGACGAC AAGCGCGAGG TGGCGTTGCG CGGCGCGATC GCGTGGCGGC CGAGCGACAG GCTCGAGCTG CTGACCACGG TCGATTATTT CCGCGAGTCC GACAATGCGT TCGGCCTCCA TTATTTCAAC CAGGGTAACC CCAATGTGCC GGTGCTGGGC CTGAAGCTGG GCGGCCTTGC CGCTCGGAAC AGCCGCGACA TCTACAGCGA CGTCGACCCG AAGGCGCGGA CCCGGTCCTG GGGGATCACC GAGGAGATCA GCTTCGACGC CGACTGGGCG AAGCTCCGGT CGATCACCTC CTACCGCAAG TTCAAGGGCT TCTACCTGAC CGACATCGAC GGGACGAGCG TTCAGCTCGC CTATGACAAG CTGTTCGAGA ATGCGAAGCA GTTCAGCCAG GAAGTGCAGC TCGACGGCGA GGTCGATCGC TTCGCCTGGC TGGTCGGCGC GCTCTACTTC CATGAGAAGA ACGACGGGGC CGGCTCGGAG ATTCCGATCA ATTCGGTGGT GGCCGGCGGC CCCTTCAGCC TGCGCCAGGC CTTCCTGTCG ATCGGCGACC TCAAGACCGA GTCCTTCTCG GCCTATGCGC GGGTCACCTT CGATGCGACC GACTGGCTCA AGCTGACCGC GGGCGGCCGC TACAACTGGG AGAAGAAGAG CATCTCCGAC GTCTTCCAGT TCGATTTCTC GCGGCCCTAT GTGCCGGGCG CGCCGATCAT CCCGATCCCG CCCTTTCCGC GATCGACCAG CGACAGCTTC TCCGGCTTCA CGCCCAGCGC GACCGCCGAG CTGCGCCTGA GCCCATCGGT CTTCGCCTAT TTCACCTATA GCCAGGGCTT CAAGAGCGGC GGCTACAACA TCGGCGTCGC CCAGGCGGCC TTCCGGCCCG AGAAGATCAA GAGCTACGAA GCCGGCGTGA AGACCACCAC CTTCGACGGG CGGCTCAAGG CCAACCTGAT CGGCTTCCAC TACGACTACA GCAATCTCCA GGTGTCGCAG GTCCGCGGGC AGAGCACGCT CGTCGAGAAT GCGGCGGCGG CCAAGGTCGA CGGGATCGAG GCGGAGCTGA TCGCCGAACC CGTCCGCGGT TTCAGCTTCG GCGGCAACCT CTCCTATCTC GATGCCAAAT ATAAGGACTT CCTCAGCATC GATCCGATCA ACGTCGCGGC CGGGCCCCAG GACCTGTCGG GCAACCGGCT GACCCAGGCG CCGAAGATCT CCTACGCCCT GTTCGCGCAG GGGAAGTGGG ACGTCGGGGA CTACACGCTG ACGCTGCGCG GCGATTACAA CCGCATCGGA CTGCAATATT TCACGCCCTT CAACAATCCG ATCGTCGCGC AGGACGGCTA TGGCGTGGGC TCGGCGCTGG CGCGGATCGA GAGCGAAGCG GGCTGGTCGG TCGAGGCCTA TGTCCGCAAC ATCGGGAACA CCAAGGCGAT CGCCCAGACC TATGTCTCGT CGGGGATGTT CGGCTTCCCC GTGCTGGGAG CGCTGATCCC GCCGCGCACT TACGGCCTGA CGCTAGGCTA CAAGCTTTAG
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Protein sequence | MRKSVVTKWM LLAGVALSAG SAQAEQAASE AGRAVDDAAS SGATGDIVVT ALRRETTLQK TPAAVAAISG EELQARGISD IQDLAAAVPS VSFGQTIGQA HIAVRGIGSD VVTAGQDPRV AFYQDGVYIA RPGAQLGGMF DVDRVEVLKG PQGTLYGRNA TGGAVSVVSR KPTDTLEGYV RTGYGNYNAV TLDGAISGPI AETLTARIAG HFEHRDGYGK NLVTGKDIDD KREVALRGAI AWRPSDRLEL LTTVDYFRES DNAFGLHYFN QGNPNVPVLG LKLGGLAARN SRDIYSDVDP KARTRSWGIT EEISFDADWA KLRSITSYRK FKGFYLTDID GTSVQLAYDK LFENAKQFSQ EVQLDGEVDR FAWLVGALYF HEKNDGAGSE IPINSVVAGG PFSLRQAFLS IGDLKTESFS AYARVTFDAT DWLKLTAGGR YNWEKKSISD VFQFDFSRPY VPGAPIIPIP PFPRSTSDSF SGFTPSATAE LRLSPSVFAY FTYSQGFKSG GYNIGVAQAA FRPEKIKSYE AGVKTTTFDG RLKANLIGFH YDYSNLQVSQ VRGQSTLVEN AAAAKVDGIE AELIAEPVRG FSFGGNLSYL DAKYKDFLSI DPINVAAGPQ DLSGNRLTQA PKISYALFAQ GKWDVGDYTL TLRGDYNRIG LQYFTPFNNP IVAQDGYGVG SALARIESEA GWSVEAYVRN IGNTKAIAQT YVSSGMFGFP VLGALIPPRT YGLTLGYKL
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