| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4274 |
|---|
| Symbol | |
|---|
| ID | 5197612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4713099 |
|---|
| End bp | 4715375 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583828 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001264752 |
|---|
| Protein GI | 148557170 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.021682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.456033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAGCA TAAGAGCGTT TCTTCACGCG TCGGCCCTGT CGGCGAGCCT GCTCGTCGCG
GCCGGCGCCG TCCAGGCGCA GCAGGCCGCG CCGGCCGCGG CGGCGGACGA TGCCGGCACC
ACCGGCCTTC AGGACATCAT CGTCACCGCC GAGCGGCGCA GCAGCAGCGC GCAGCGGACG
CCGGTCGCCG TCACGGCGCT GAGCGCCGAC ACGCTGGTGG CAGCGCAAGT GCGCACGCTG
ACCGACATGC AGCAGCTCGT CCCGGCCTTC AAGATGGGCG AGAATGACGG CTATGCCCAG
CTCACCATCC GCGGCATCGG CAGCTCGGGC TTCGTGCCGA CCGCCGAGGG CGCGGTCGCG
GTCAACCTGA ACGACGTCTA TGTCTCGCGC CCGATCGCGC AGCTCGCCGG CATGTACGAC
ATCGCCTCGG TCGAGGTGCT GAAGGGGCCG CAGGGCACCC TCTACGGCCG CAACGCCACC
GCCGGTTCGG TCAATATGTC GACCGCGCGG CCGACCAACG AATGGTCGGG TTTCGGCCGC
GTGCTGGTCG GCAACTATCG CGCGCTCAAC GTCGAGGGCG CGGTCGGTGG CGCGCTGGTC
GAGGATCGCC TGCTCGTCCG CGTCGCCGGC TTCATGGACA AGCATGACGG CTACGGCAAG
AACCTGGTCA CCGGCAACGA CGTCAGCGAC AAGGACGCCT GGGGCGTCCG CGCCACGGTG
GTGGTCAAGC CGACCGACAC CCTGACCGGC ACCCTGATCT ACGAGCATTA CAAGCAGAGC
GACAATGGCG CGGCGCTCCA CTATTTCGGC GCCGCCGGCC TGACCGGATT GCCGGGCGCG
CTCGGCACGC CGCCGGTCTT CCAGCAGCTC GGCGGCTATG CGGCGTCCGA CGTCCAGGAC
ATCGCCTCGC CGCGCGATTC CAGGTTCCGC CTGCGCATCG ACGCGGTCAC CGGCATCCTC
GAATGGTCGC TGGGCGATTT CCAGCTCAAG TCGATCACCG GCTATCGCGA CCAGAACTCG
CTGACGATCA CCCCACTCGG CGGCGGCAGC TCCGTCGACG CCTTCTTCAT CGCCGGCGAG
CCCGCGCACC AGTTCAGCCA GGAGGTGCAG CTCAACTACA CCTCGGACCG GCTGAAGGCG
ACCGCCGGCC TGTTCTACTT CCGCGAGAAG GACTCGTCGG TCCCGGGCTC GTCGCCGTTC
CCGCGCTCGG TGCTCAATGC CTTCTTCGGC GTCCCCGACG ACGGCACCCC CGACTATCTG
GTCGACTTCG TCGAGATCGG CGGCACGATC AAGACGCGCG CCAAGGCGGC CTTCGCGCAG
GCGACCTATG AGGTGGTCGA CAACCTCTCG CTCACCGCCG GCATCCGCGT CAGCAACGAG
CGCAAGCAGG CCTTCCTGGT CAACGGCTTC AGCCTGACGC AGCCCTATAT CGCCAATTCG
CCCACCACCA ACGACACCCC GCTGCCGCCG GTGACGGTGC AGCCGCGCGT CTCGTTCAAC
TCGACGACGC CGCGTCTCGG CATCCAGTAT CAGGTCGATC CGCGGACCAT GGTCTATGCG
TCCTATTCGA AGGGCTTCAA GTCGGGCGGC TACGACGTCA CCACGGTGGC GCCGGCGTTC
GAGCCGGAGA AGCTGACCGC CTATGAGGTC GGCATCAAGA CGACCATGGC GAACAACCGG
CTGCGCTTCA ACGCCGCGGG CTTCTATTAC GACTATACCA ACCTGCAGGT GCTGCAGGTC
GTTGGTCCGG CGGTCGTCAC CACCAACGCC GCGACGGCGC GGGTCTATGG CGTGGAGGCG
CAGATCGACG CGATCGTCAG CGACCAGTTC AAGCTGGAGG CCTCGGGTTC CTACCTCAAC
ACCAAATATA AGAACTATGC CGGTCCCGAC GGCGCCCGCC CGCTGCTGGC CACGGTCGAT
TTCAGCGGCA ACCACCTGAA CAACGCGCCG GAGTTTCAGG CCTATCTGGC CGGCACCTAT
ACCTGGGCGC TGGGCGACGG CGAGATTGCG GCCCGCGTCG ACGGCGAATA TTCGACCCGC
TATTATTTCA CCCCGGCCAA CCTGAAGCTG CTGAGCCAGA AGCCGTTCGC CAAGGTCAAC
GCCTCGCTGA CCTACAAGGC GGCGAACAAC TGGCAGGTCA CCGCCTTCGT GAAGAACATC
ACCGATATCG ACACCAAGAC GAGCGGCGTG GTGAACACCC CGATCCTGGG CACGCCCGCC
CAGGGCGCGG TTGCGCCGCC CCGGACCTTC GGCCTGGAAG CCCGCTACAG CTTCTGA
|
|---|
| Protein sequence | MTSIRAFLHA SALSASLLVA AGAVQAQQAA PAAAADDAGT TGLQDIIVTA ERRSSSAQRT
PVAVTALSAD TLVAAQVRTL TDMQQLVPAF KMGENDGYAQ LTIRGIGSSG FVPTAEGAVA
VNLNDVYVSR PIAQLAGMYD IASVEVLKGP QGTLYGRNAT AGSVNMSTAR PTNEWSGFGR
VLVGNYRALN VEGAVGGALV EDRLLVRVAG FMDKHDGYGK NLVTGNDVSD KDAWGVRATV
VVKPTDTLTG TLIYEHYKQS DNGAALHYFG AAGLTGLPGA LGTPPVFQQL GGYAASDVQD
IASPRDSRFR LRIDAVTGIL EWSLGDFQLK SITGYRDQNS LTITPLGGGS SVDAFFIAGE
PAHQFSQEVQ LNYTSDRLKA TAGLFYFREK DSSVPGSSPF PRSVLNAFFG VPDDGTPDYL
VDFVEIGGTI KTRAKAAFAQ ATYEVVDNLS LTAGIRVSNE RKQAFLVNGF SLTQPYIANS
PTTNDTPLPP VTVQPRVSFN STTPRLGIQY QVDPRTMVYA SYSKGFKSGG YDVTTVAPAF
EPEKLTAYEV GIKTTMANNR LRFNAAGFYY DYTNLQVLQV VGPAVVTTNA ATARVYGVEA
QIDAIVSDQF KLEASGSYLN TKYKNYAGPD GARPLLATVD FSGNHLNNAP EFQAYLAGTY
TWALGDGEIA ARVDGEYSTR YYFTPANLKL LSQKPFAKVN ASLTYKAANN WQVTAFVKNI
TDIDTKTSGV VNTPILGTPA QGAVAPPRTF GLEARYSF
|
|---|
| |