Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4274 |
Symbol | |
ID | 5197612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4713099 |
End bp | 4715375 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583828 |
Product | TonB-dependent receptor |
Protein accession | YP_001264752 |
Protein GI | 148557170 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.021682 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.456033 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAGCA TAAGAGCGTT TCTTCACGCG TCGGCCCTGT CGGCGAGCCT GCTCGTCGCG GCCGGCGCCG TCCAGGCGCA GCAGGCCGCG CCGGCCGCGG CGGCGGACGA TGCCGGCACC ACCGGCCTTC AGGACATCAT CGTCACCGCC GAGCGGCGCA GCAGCAGCGC GCAGCGGACG CCGGTCGCCG TCACGGCGCT GAGCGCCGAC ACGCTGGTGG CAGCGCAAGT GCGCACGCTG ACCGACATGC AGCAGCTCGT CCCGGCCTTC AAGATGGGCG AGAATGACGG CTATGCCCAG CTCACCATCC GCGGCATCGG CAGCTCGGGC TTCGTGCCGA CCGCCGAGGG CGCGGTCGCG GTCAACCTGA ACGACGTCTA TGTCTCGCGC CCGATCGCGC AGCTCGCCGG CATGTACGAC ATCGCCTCGG TCGAGGTGCT GAAGGGGCCG CAGGGCACCC TCTACGGCCG CAACGCCACC GCCGGTTCGG TCAATATGTC GACCGCGCGG CCGACCAACG AATGGTCGGG TTTCGGCCGC GTGCTGGTCG GCAACTATCG CGCGCTCAAC GTCGAGGGCG CGGTCGGTGG CGCGCTGGTC GAGGATCGCC TGCTCGTCCG CGTCGCCGGC TTCATGGACA AGCATGACGG CTACGGCAAG AACCTGGTCA CCGGCAACGA CGTCAGCGAC AAGGACGCCT GGGGCGTCCG CGCCACGGTG GTGGTCAAGC CGACCGACAC CCTGACCGGC ACCCTGATCT ACGAGCATTA CAAGCAGAGC GACAATGGCG CGGCGCTCCA CTATTTCGGC GCCGCCGGCC TGACCGGATT GCCGGGCGCG CTCGGCACGC CGCCGGTCTT CCAGCAGCTC GGCGGCTATG CGGCGTCCGA CGTCCAGGAC ATCGCCTCGC CGCGCGATTC CAGGTTCCGC CTGCGCATCG ACGCGGTCAC CGGCATCCTC GAATGGTCGC TGGGCGATTT CCAGCTCAAG TCGATCACCG GCTATCGCGA CCAGAACTCG CTGACGATCA CCCCACTCGG CGGCGGCAGC TCCGTCGACG CCTTCTTCAT CGCCGGCGAG CCCGCGCACC AGTTCAGCCA GGAGGTGCAG CTCAACTACA CCTCGGACCG GCTGAAGGCG ACCGCCGGCC TGTTCTACTT CCGCGAGAAG GACTCGTCGG TCCCGGGCTC GTCGCCGTTC CCGCGCTCGG TGCTCAATGC CTTCTTCGGC GTCCCCGACG ACGGCACCCC CGACTATCTG GTCGACTTCG TCGAGATCGG CGGCACGATC AAGACGCGCG CCAAGGCGGC CTTCGCGCAG GCGACCTATG AGGTGGTCGA CAACCTCTCG CTCACCGCCG GCATCCGCGT CAGCAACGAG CGCAAGCAGG CCTTCCTGGT CAACGGCTTC AGCCTGACGC AGCCCTATAT CGCCAATTCG CCCACCACCA ACGACACCCC GCTGCCGCCG GTGACGGTGC AGCCGCGCGT CTCGTTCAAC TCGACGACGC CGCGTCTCGG CATCCAGTAT CAGGTCGATC CGCGGACCAT GGTCTATGCG TCCTATTCGA AGGGCTTCAA GTCGGGCGGC TACGACGTCA CCACGGTGGC GCCGGCGTTC GAGCCGGAGA AGCTGACCGC CTATGAGGTC GGCATCAAGA CGACCATGGC GAACAACCGG CTGCGCTTCA ACGCCGCGGG CTTCTATTAC GACTATACCA ACCTGCAGGT GCTGCAGGTC GTTGGTCCGG CGGTCGTCAC CACCAACGCC GCGACGGCGC GGGTCTATGG CGTGGAGGCG CAGATCGACG CGATCGTCAG CGACCAGTTC AAGCTGGAGG CCTCGGGTTC CTACCTCAAC ACCAAATATA AGAACTATGC CGGTCCCGAC GGCGCCCGCC CGCTGCTGGC CACGGTCGAT TTCAGCGGCA ACCACCTGAA CAACGCGCCG GAGTTTCAGG CCTATCTGGC CGGCACCTAT ACCTGGGCGC TGGGCGACGG CGAGATTGCG GCCCGCGTCG ACGGCGAATA TTCGACCCGC TATTATTTCA CCCCGGCCAA CCTGAAGCTG CTGAGCCAGA AGCCGTTCGC CAAGGTCAAC GCCTCGCTGA CCTACAAGGC GGCGAACAAC TGGCAGGTCA CCGCCTTCGT GAAGAACATC ACCGATATCG ACACCAAGAC GAGCGGCGTG GTGAACACCC CGATCCTGGG CACGCCCGCC CAGGGCGCGG TTGCGCCGCC CCGGACCTTC GGCCTGGAAG CCCGCTACAG CTTCTGA
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Protein sequence | MTSIRAFLHA SALSASLLVA AGAVQAQQAA PAAAADDAGT TGLQDIIVTA ERRSSSAQRT PVAVTALSAD TLVAAQVRTL TDMQQLVPAF KMGENDGYAQ LTIRGIGSSG FVPTAEGAVA VNLNDVYVSR PIAQLAGMYD IASVEVLKGP QGTLYGRNAT AGSVNMSTAR PTNEWSGFGR VLVGNYRALN VEGAVGGALV EDRLLVRVAG FMDKHDGYGK NLVTGNDVSD KDAWGVRATV VVKPTDTLTG TLIYEHYKQS DNGAALHYFG AAGLTGLPGA LGTPPVFQQL GGYAASDVQD IASPRDSRFR LRIDAVTGIL EWSLGDFQLK SITGYRDQNS LTITPLGGGS SVDAFFIAGE PAHQFSQEVQ LNYTSDRLKA TAGLFYFREK DSSVPGSSPF PRSVLNAFFG VPDDGTPDYL VDFVEIGGTI KTRAKAAFAQ ATYEVVDNLS LTAGIRVSNE RKQAFLVNGF SLTQPYIANS PTTNDTPLPP VTVQPRVSFN STTPRLGIQY QVDPRTMVYA SYSKGFKSGG YDVTTVAPAF EPEKLTAYEV GIKTTMANNR LRFNAAGFYY DYTNLQVLQV VGPAVVTTNA ATARVYGVEA QIDAIVSDQF KLEASGSYLN TKYKNYAGPD GARPLLATVD FSGNHLNNAP EFQAYLAGTY TWALGDGEIA ARVDGEYSTR YYFTPANLKL LSQKPFAKVN ASLTYKAANN WQVTAFVKNI TDIDTKTSGV VNTPILGTPA QGAVAPPRTF GLEARYSF
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