Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4257 |
Symbol | |
ID | 5197162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4693297 |
End bp | 4695564 |
Gene Length | 2268 bp |
Protein Length | 755 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640583811 |
Product | TonB-dependent receptor |
Protein accession | YP_001264735 |
Protein GI | 148557153 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.737167 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGGG AACGATCGAT CATGACCGTG CGGCTCGCCG CGTTGGCGGC GGGTGCCAGC CTGCTGGCGT TCGGCAATCC GTCCTACGCC CAGACCGGGG CGTCGGAGGA TGTCGAGGGC GTCGAGGCGA TCACCGTCAC CGCGCGGAAG CGCGAGGAGC GGTTGCAGGA GGCGCCGATC TCGATAACCG CGCTGTCGTC CGCGACGCTC GAACGCGCCC AGGTCGGCAC GATCGCCGGC ATCTCGAACT TCACGCCCAA CCTGATCCTC AATGAATCGG CGGCGATCTC GGGCAACAAC GCTGCCACCA CGACCTTCAT CCGCGGCATC GGGCAATATG ACTTCACCCC GACGACCGAG CCGGCGGTCG GCCTCTATGT CGACGGCGTC TATGTCGCGC GGTCGGTCGG CGCGCTTCTC GACGTCGCAG ACGTCGAGCG TGTCGAGGTG CTGCGCGGGC CGCAGGGCAC ATTGTTCGGC CGCAACACCA TCGGCGGCGC GGTCAGCATC ACCTCGCTGC GGCCGAGCGA CGATGCGTTC GAAGGCTATG TCGACGTGCG GACCGGAAGC TTCGAGCGCT TCGACGCCAA GGCCGCCGTC AACATCCCGA TCGCCGAGGG ACTGGCCGTC CGCGCCTCGG GCTCGCGGCG CAGCCGGGAA GGCTATGTCC GCCGCGTTTC GGACGGCGTC CGCAACGGCA ACCAGGATAG CTGGTCCGGC CGCATCGACA TGCTGGCGGA AACCGAGGGC GGCTTCCGCG CCCGCCTGAT CGTCGACGGA ACGCGCCGCC GCGAGAACAT GGCGGCCAAT CAGCTCGTCG CCGTCTATCC CAATGCGGGT TTCGTGCAGG TCTACAATAC GCAGGTCGCC GGCGCGGCCT GCACGCCCAA CCCCGGGCCG GTCGGCAACA GCCTCTGCTA CAATTCGCAA TGGATTCCGC AGAAGGGCGA GCGGATCACC TACGGCACCT TTCCCTCCCA GTCGGACCTC GACCTGTGGG GCGTCTCGCT CAACCTCGAG CAGGAGATCG GCAAGGTCAC GATCAAGTCG ATCTCGGCCT ATCGCGACAT GAAGTCGATC TCCTCCCGCG ACGGCGATCA TTCGCCGCTG CGCATCTTCG AGACCGTCGA CGATTACGAC CAGTGGCAGT TCAGCCAGGA ATTCCAGGTG CTGGGAACGT CGTTCGACGA TCGCCTGAAA TGGATCGCCG GCGCCTATTA TTTCAAGGAG AAGGGCGGCG ACGCCAACAT GGTCTATACC TCGCGGATCG ACTTCATGTC CGGCGGCCGG ATCGACAATG ACTCGGCGGC GCTGTTCGGC CAGGCCACGT TCGACGTCAC CGACAAGCTG TCGGTCACCG GCGGCCTGCG CTACACGAAG GACTGGAAGC GCTTCCTGCC CGATCAATAT GTGACCAATT CCGGCCTGAC CCCGTTCCCG GTCGGATCGC GGCTGGCGCC GTACGTCAAG TACAGGTCGA CCTATCACGA CCTCAACCCG ACGGCGGACG TCAGCTACAA ATTCTCGCGC GACATCATGA CCTATTTCCG TTTCTCGGAG GGGTTCAAGA GCGGCGGCTA CGCATTCCGC TTCTTCCCGC CCACCACCAC CGTACCCGAC TATCAGCCCG AATATGCCAA GGTCTACGAA CTCGGCTTCA AGTCGACGAT GTTCGACCGC CGGCTGCAGT TCAATGCCGC CGTCTTCCGC ACCGACTATA CCAATATCCA GGTCAGCGGC ATTCCGACCG GGCGGGTCGG CGCGATCACC TTCAACGCCG GCGATGCGCG CATCCATGGC GGCGAGGTCG AAATCTCGGC GCGGCCGATC CCGCCGCTGC GGTTCCAGTT CGGCGCGGGC TATCTCGATG CGGGATATCG CAACGTTCCA ACCAACCTCG GCGCGATCGA CGTGAACAAC GACTCCCGCT TCGCCTATGC GCCGACCTGG TCGCTGACCG GCAACGCTTC CTACGAGATC GAGACGGGCA TCGGAACGAT CACGCCGCAG CTCGACTGGA GCTATCGGAC CAAGGTCTAC GGCAACCCCG CCAATACGCC GGCGGCGATC CAGCCGGGCT ATCATCTCGT CAACGGCAGC ATCGCCTGGC GCGACCCGTC GGGCGTCTGG CAGGTCACCG CGGGCGTGAC CAACCTGTTC GACAAGCGCT ACTTCACGAC CGCCTATGCC AGCCCGAGCG TCGGCTACTC CGAAGTCCTG TTCGGTCGTC CGCGCGAATG GTTCCTGGGC GTCCGGCGCA GCTTCTGA
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Protein sequence | MNRERSIMTV RLAALAAGAS LLAFGNPSYA QTGASEDVEG VEAITVTARK REERLQEAPI SITALSSATL ERAQVGTIAG ISNFTPNLIL NESAAISGNN AATTTFIRGI GQYDFTPTTE PAVGLYVDGV YVARSVGALL DVADVERVEV LRGPQGTLFG RNTIGGAVSI TSLRPSDDAF EGYVDVRTGS FERFDAKAAV NIPIAEGLAV RASGSRRSRE GYVRRVSDGV RNGNQDSWSG RIDMLAETEG GFRARLIVDG TRRRENMAAN QLVAVYPNAG FVQVYNTQVA GAACTPNPGP VGNSLCYNSQ WIPQKGERIT YGTFPSQSDL DLWGVSLNLE QEIGKVTIKS ISAYRDMKSI SSRDGDHSPL RIFETVDDYD QWQFSQEFQV LGTSFDDRLK WIAGAYYFKE KGGDANMVYT SRIDFMSGGR IDNDSAALFG QATFDVTDKL SVTGGLRYTK DWKRFLPDQY VTNSGLTPFP VGSRLAPYVK YRSTYHDLNP TADVSYKFSR DIMTYFRFSE GFKSGGYAFR FFPPTTTVPD YQPEYAKVYE LGFKSTMFDR RLQFNAAVFR TDYTNIQVSG IPTGRVGAIT FNAGDARIHG GEVEISARPI PPLRFQFGAG YLDAGYRNVP TNLGAIDVNN DSRFAYAPTW SLTGNASYEI ETGIGTITPQ LDWSYRTKVY GNPANTPAAI QPGYHLVNGS IAWRDPSGVW QVTAGVTNLF DKRYFTTAYA SPSVGYSEVL FGRPREWFLG VRRSF
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