| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4210 |
|---|
| Symbol | |
|---|
| ID | 5196102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4638404 |
|---|
| End bp | 4639288 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583764 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001264688 |
|---|
| Protein GI | 148557106 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0331474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGGC GCCTTCCACC ATTGACTCCG CTTCGAGCGT TCGAGGCGGT CGCCCGCCAT
GGCAGCATCC GGGGCGCCGC GGCCGAGCTG TCGATCGACC ATTCGGCGGT CAGCCGCCAT
ATCCGCAATC TCGAAGGGGC GCTCGGCACG CGGCTGGTCC AGACCGAGCG GACGGGCGTG
CGGCTGACCG ATAGCGGCGA GCGTTTCCAG ACATATCTGG CGCAAGCCTT CGACCTGCTC
GATGCCGCCG TCGAGGAGAT TTCCCCCCGC GCCCGGCGCG AGCTGCGGAT CTGGTGCGCG
CCGGGCCTCG CCACCTGCTG GCTGACCCGG CACCTGCCCG AGCTCGAGCA GACGATGACC
GACTGCGACA TATTGCTCAA CCCGACCCTC GCCGTCGCCA ATCTCGAACG CGGCGACGCC
GATGTGGAGA TCCATTATGG CGCGCGCAGC CAGTCGAGGG TGGCCAGCGA GGTGCTCGTC
CATCCGCCCT TCTTCCCCGT CGCCGCCCCG GCGTTCCTCG CGAGCCGGGG GCCGTTCGCC
TCGGCGGCGG CGCTGGTCGA GGAACGGCTG CTCCACGAAT CCTCGCGCGA CCAATGGCGC
AACTGGTTCG AGAAGACCGG GCTCGGAATC GTGCCGCCGC TCGGCGGGCC GCGGCTGTCG
CACGCCGATG CGGCGATCGA GGCCGCGGTG CAGGGCCATG GCATCGCACT CGCCAACCGG
ATACTGGTCC GCGAGGAACT CGCGAGCGGA CGGCTCGCCA TGGCCCTGCC GCTCGAGATC
CAGCTCGAGC CCTATGTGCT GACGACGGCG CAATCGCGAT GGTCGGATCC TGTCATCGCG
CGCTTCCGTC GCTGGCTCGC GAACGCCCTG GCGGAGCATG GCTGA
|
|---|
| Protein sequence | MRRRLPPLTP LRAFEAVARH GSIRGAAAEL SIDHSAVSRH IRNLEGALGT RLVQTERTGV
RLTDSGERFQ TYLAQAFDLL DAAVEEISPR ARRELRIWCA PGLATCWLTR HLPELEQTMT
DCDILLNPTL AVANLERGDA DVEIHYGARS QSRVASEVLV HPPFFPVAAP AFLASRGPFA
SAAALVEERL LHESSRDQWR NWFEKTGLGI VPPLGGPRLS HADAAIEAAV QGHGIALANR
ILVREELASG RLAMALPLEI QLEPYVLTTA QSRWSDPVIA RFRRWLANAL AEHG
|
|---|
| |