Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4179 |
Symbol | |
ID | 5199810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4598163 |
End bp | 4600511 |
Gene Length | 2349 bp |
Protein Length | 782 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640583733 |
Product | TonB-dependent receptor |
Protein accession | YP_001264657 |
Protein GI | 148557075 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.130492 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTTCG GCTGTTTTGT AAGCCGCGCC TTTTCGGGCG TCCGGTCCAT CGGTCTGACC GCCGGGTGCA GCCTGCTGCC ACTCATGGCG CCGGGGGCTC TCGCACAGGT CGCGGCTCCG CAGGCGGGCG ATCAGAATGA CGACATCGTC GTCACCGCCC AGAAGCGGAG CCAGAACCTC CAGGATGTCG GCATCACCAT GGCCGCCATT TCCGGAGACA AGTTGCGGGA CAACGCCATA ACCACCAGCA CCGAGATCGC GAAGATCATT CCGGGCATCT CGGTCAGCGG CGTCGCGGGC GGCCAGTTCA CCACCTTCGT CATTCGTGGC GTCACGCAGA GCGATTTCGG GGACCATACC GAAGCCCCCA CCGCGGTCTA TCTCGACGAG GGCTACATCG CCTCGGGACA GGGCCAGAGC TTCGCGCTGT TCGACCTCGA GCGGGTCGAG GCGCTGAAGG GACCCCAAGG CACGCTCTTC GGGCGCAATG CGACGGGCGG CCTCGTCCAC TTCATCTCGC GCAAGCCGAC GCAGGAACTC GACGGTTTCG TCCAGGGTAC CTATGGTTCC TATAACCAGA CGCGTCTCGA AGCGGCCATC GGCGGCGGGC TGGGCGACAA GGTGTCGGTC CGGGCCGCGG GTCTTTTCAA CAGCCATAAA CCCGTCCTCA AGAATCTGTA TCTCCGAGCT GATGGCCGGC GGGCCGATGG GGAGTGGACC GACCATACGG TGGCCGGCCG CTTCCATCTG GAGTTCCAAC CGACCGAGAC GCTCAAGATC CTGTTCACGG CCCATGCCGG TGAATCCCGC AAATCGACCT CTCCCTACGA CCAGCGCGCA TCGGTTCCGG TGTTGGACGG CAGCGGCAGG GTGATCGATT CGATCTTCGC GGCGCCGACG GAGACGCGCT TCGCGATCAT TCCGCCGGGA GCGATCAACG TCGATCCGTC GCTGATCGGC ATCCGGCCCG TTCCCGGTGG TGATTGGGGC GGCTATCGCG GCGGCGATCC CGAGGCGCTA ACGGTCACCA AGAATTTCAG CGACCGCGAT GGCAACCGGT TCAGGATGTG GGGTGGCAGC GCCAAGGTCA GCTATGAGCT GGGTGACCTG AACCTCGTGT CGATCACCGA CTATAAGAAG GTGACCAAGC GCGTCTACAT GGACATTGAC GCCTCCCCGC GGAACGACCT GGTGTTTCCG GCGCTTGCCG AAACGGCCAA TTTCTCCGAG GAACTGAGGT TGTCCAGAGA CAGCGGCCGG TTCCGATGGA TCGTCGGAGC CTATTATCTC AACATCGACA CCAACGCCGA AACGGGTTTC CTCATCAATG CTCCGCTGGA TGCGACGATC AGGGAACTCA TACCGAACTC GGTCTATATC CGCGACCTGA CGTCGCTCAG GACCAAGTCC TATTCGCTGT TCGCCCAGGC GGAATATGAC CTGTCCGATG TGCTGACGAT TATTGCCGGC GCGCGCGGAA CGCAGGAGAA TAAGGATTTC ACCTATCGAA CCGATCAACT CGTTCGCGCC ACCTTCGCCA GCAACCTGCG CAATTTCGCG GACGGCGACA ACCGCATGCT CTGGTCGGGA AAGGCCCAGC TGAACTGGAA GCCAGTTGAG GACGTCCTCA TCTATGGCGG CATCAATCGC GGTGTGAAGG CGGGAAGCTG GAATGCGCCG CTTGCCGGCA ATCCGGTGAT CACCGATGCT CAGCTTGCCT ACAAGCCGGA GGTGCTGACC TCCTATGAGG TGGGCCTGAA AACGACATTC TGGGACGGCA GGGGACGTTT CAACGCGGCG GCCTTCTATT ATGACTATCA TGATTACCAG GCATCGCTTT TCCTTGGTCT TGCCCAACGG ATTCTGAACG CCGACGCCAC CATCAAGGGT CTTGAGGCCG AGTTCGCTAT CAAGCCGGTA CCAGGGCTCG ACATCCAGAT CTCCGGCGCG TTTACCGACA CCAATGTCGA AGATGTCAAT GTCAACGGGA TCGTCCGGGA TCGCGAAAGC GCCTATGCAC CCCGCTGGAC CGGCAATGCC TCGGCACGGT ACAGGGTGCC GGTCGGCTTC GGTCAGGTCT ATGCACAGGT CGACGCTTCT TATTCGGGCC GCTTCTATTA TTCCCTGACC AACTTCACCT CGACCAGGGT CAATCGCTAC GTCATCCCGA ATGCGGAGAT CGGCTTTACG AGCCTGGACG GGCGCTTCTC CCTGGCAGCG TTCGCCCGCA ATTTCACCGA CAAGCGCTAT ATCGCCGTCG GTGCCGATCT GAGCGGTTTC GGGGGCTATT CGGAGCAGTC CTACGGCAAT CCGCGATGGC TGGGCATCCG TGCCGGTTAC ACTTTCTGA
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Protein sequence | MVFGCFVSRA FSGVRSIGLT AGCSLLPLMA PGALAQVAAP QAGDQNDDIV VTAQKRSQNL QDVGITMAAI SGDKLRDNAI TTSTEIAKII PGISVSGVAG GQFTTFVIRG VTQSDFGDHT EAPTAVYLDE GYIASGQGQS FALFDLERVE ALKGPQGTLF GRNATGGLVH FISRKPTQEL DGFVQGTYGS YNQTRLEAAI GGGLGDKVSV RAAGLFNSHK PVLKNLYLRA DGRRADGEWT DHTVAGRFHL EFQPTETLKI LFTAHAGESR KSTSPYDQRA SVPVLDGSGR VIDSIFAAPT ETRFAIIPPG AINVDPSLIG IRPVPGGDWG GYRGGDPEAL TVTKNFSDRD GNRFRMWGGS AKVSYELGDL NLVSITDYKK VTKRVYMDID ASPRNDLVFP ALAETANFSE ELRLSRDSGR FRWIVGAYYL NIDTNAETGF LINAPLDATI RELIPNSVYI RDLTSLRTKS YSLFAQAEYD LSDVLTIIAG ARGTQENKDF TYRTDQLVRA TFASNLRNFA DGDNRMLWSG KAQLNWKPVE DVLIYGGINR GVKAGSWNAP LAGNPVITDA QLAYKPEVLT SYEVGLKTTF WDGRGRFNAA AFYYDYHDYQ ASLFLGLAQR ILNADATIKG LEAEFAIKPV PGLDIQISGA FTDTNVEDVN VNGIVRDRES AYAPRWTGNA SARYRVPVGF GQVYAQVDAS YSGRFYYSLT NFTSTRVNRY VIPNAEIGFT SLDGRFSLAA FARNFTDKRY IAVGADLSGF GGYSEQSYGN PRWLGIRAGY TF
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