| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4179 |
|---|
| Symbol | |
|---|
| ID | 5199810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4598163 |
|---|
| End bp | 4600511 |
|---|
| Gene Length | 2349 bp |
|---|
| Protein Length | 782 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640583733 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001264657 |
|---|
| Protein GI | 148557075 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.130492 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTCG GCTGTTTTGT AAGCCGCGCC TTTTCGGGCG TCCGGTCCAT CGGTCTGACC
GCCGGGTGCA GCCTGCTGCC ACTCATGGCG CCGGGGGCTC TCGCACAGGT CGCGGCTCCG
CAGGCGGGCG ATCAGAATGA CGACATCGTC GTCACCGCCC AGAAGCGGAG CCAGAACCTC
CAGGATGTCG GCATCACCAT GGCCGCCATT TCCGGAGACA AGTTGCGGGA CAACGCCATA
ACCACCAGCA CCGAGATCGC GAAGATCATT CCGGGCATCT CGGTCAGCGG CGTCGCGGGC
GGCCAGTTCA CCACCTTCGT CATTCGTGGC GTCACGCAGA GCGATTTCGG GGACCATACC
GAAGCCCCCA CCGCGGTCTA TCTCGACGAG GGCTACATCG CCTCGGGACA GGGCCAGAGC
TTCGCGCTGT TCGACCTCGA GCGGGTCGAG GCGCTGAAGG GACCCCAAGG CACGCTCTTC
GGGCGCAATG CGACGGGCGG CCTCGTCCAC TTCATCTCGC GCAAGCCGAC GCAGGAACTC
GACGGTTTCG TCCAGGGTAC CTATGGTTCC TATAACCAGA CGCGTCTCGA AGCGGCCATC
GGCGGCGGGC TGGGCGACAA GGTGTCGGTC CGGGCCGCGG GTCTTTTCAA CAGCCATAAA
CCCGTCCTCA AGAATCTGTA TCTCCGAGCT GATGGCCGGC GGGCCGATGG GGAGTGGACC
GACCATACGG TGGCCGGCCG CTTCCATCTG GAGTTCCAAC CGACCGAGAC GCTCAAGATC
CTGTTCACGG CCCATGCCGG TGAATCCCGC AAATCGACCT CTCCCTACGA CCAGCGCGCA
TCGGTTCCGG TGTTGGACGG CAGCGGCAGG GTGATCGATT CGATCTTCGC GGCGCCGACG
GAGACGCGCT TCGCGATCAT TCCGCCGGGA GCGATCAACG TCGATCCGTC GCTGATCGGC
ATCCGGCCCG TTCCCGGTGG TGATTGGGGC GGCTATCGCG GCGGCGATCC CGAGGCGCTA
ACGGTCACCA AGAATTTCAG CGACCGCGAT GGCAACCGGT TCAGGATGTG GGGTGGCAGC
GCCAAGGTCA GCTATGAGCT GGGTGACCTG AACCTCGTGT CGATCACCGA CTATAAGAAG
GTGACCAAGC GCGTCTACAT GGACATTGAC GCCTCCCCGC GGAACGACCT GGTGTTTCCG
GCGCTTGCCG AAACGGCCAA TTTCTCCGAG GAACTGAGGT TGTCCAGAGA CAGCGGCCGG
TTCCGATGGA TCGTCGGAGC CTATTATCTC AACATCGACA CCAACGCCGA AACGGGTTTC
CTCATCAATG CTCCGCTGGA TGCGACGATC AGGGAACTCA TACCGAACTC GGTCTATATC
CGCGACCTGA CGTCGCTCAG GACCAAGTCC TATTCGCTGT TCGCCCAGGC GGAATATGAC
CTGTCCGATG TGCTGACGAT TATTGCCGGC GCGCGCGGAA CGCAGGAGAA TAAGGATTTC
ACCTATCGAA CCGATCAACT CGTTCGCGCC ACCTTCGCCA GCAACCTGCG CAATTTCGCG
GACGGCGACA ACCGCATGCT CTGGTCGGGA AAGGCCCAGC TGAACTGGAA GCCAGTTGAG
GACGTCCTCA TCTATGGCGG CATCAATCGC GGTGTGAAGG CGGGAAGCTG GAATGCGCCG
CTTGCCGGCA ATCCGGTGAT CACCGATGCT CAGCTTGCCT ACAAGCCGGA GGTGCTGACC
TCCTATGAGG TGGGCCTGAA AACGACATTC TGGGACGGCA GGGGACGTTT CAACGCGGCG
GCCTTCTATT ATGACTATCA TGATTACCAG GCATCGCTTT TCCTTGGTCT TGCCCAACGG
ATTCTGAACG CCGACGCCAC CATCAAGGGT CTTGAGGCCG AGTTCGCTAT CAAGCCGGTA
CCAGGGCTCG ACATCCAGAT CTCCGGCGCG TTTACCGACA CCAATGTCGA AGATGTCAAT
GTCAACGGGA TCGTCCGGGA TCGCGAAAGC GCCTATGCAC CCCGCTGGAC CGGCAATGCC
TCGGCACGGT ACAGGGTGCC GGTCGGCTTC GGTCAGGTCT ATGCACAGGT CGACGCTTCT
TATTCGGGCC GCTTCTATTA TTCCCTGACC AACTTCACCT CGACCAGGGT CAATCGCTAC
GTCATCCCGA ATGCGGAGAT CGGCTTTACG AGCCTGGACG GGCGCTTCTC CCTGGCAGCG
TTCGCCCGCA ATTTCACCGA CAAGCGCTAT ATCGCCGTCG GTGCCGATCT GAGCGGTTTC
GGGGGCTATT CGGAGCAGTC CTACGGCAAT CCGCGATGGC TGGGCATCCG TGCCGGTTAC
ACTTTCTGA
|
|---|
| Protein sequence | MVFGCFVSRA FSGVRSIGLT AGCSLLPLMA PGALAQVAAP QAGDQNDDIV VTAQKRSQNL
QDVGITMAAI SGDKLRDNAI TTSTEIAKII PGISVSGVAG GQFTTFVIRG VTQSDFGDHT
EAPTAVYLDE GYIASGQGQS FALFDLERVE ALKGPQGTLF GRNATGGLVH FISRKPTQEL
DGFVQGTYGS YNQTRLEAAI GGGLGDKVSV RAAGLFNSHK PVLKNLYLRA DGRRADGEWT
DHTVAGRFHL EFQPTETLKI LFTAHAGESR KSTSPYDQRA SVPVLDGSGR VIDSIFAAPT
ETRFAIIPPG AINVDPSLIG IRPVPGGDWG GYRGGDPEAL TVTKNFSDRD GNRFRMWGGS
AKVSYELGDL NLVSITDYKK VTKRVYMDID ASPRNDLVFP ALAETANFSE ELRLSRDSGR
FRWIVGAYYL NIDTNAETGF LINAPLDATI RELIPNSVYI RDLTSLRTKS YSLFAQAEYD
LSDVLTIIAG ARGTQENKDF TYRTDQLVRA TFASNLRNFA DGDNRMLWSG KAQLNWKPVE
DVLIYGGINR GVKAGSWNAP LAGNPVITDA QLAYKPEVLT SYEVGLKTTF WDGRGRFNAA
AFYYDYHDYQ ASLFLGLAQR ILNADATIKG LEAEFAIKPV PGLDIQISGA FTDTNVEDVN
VNGIVRDRES AYAPRWTGNA SARYRVPVGF GQVYAQVDAS YSGRFYYSLT NFTSTRVNRY
VIPNAEIGFT SLDGRFSLAA FARNFTDKRY IAVGADLSGF GGYSEQSYGN PRWLGIRAGY
TF
|
|---|
| |