| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4082 |
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| Symbol | |
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| ID | 5198939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4479827 |
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| End bp | 4482493 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640583638 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001264563 |
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| Protein GI | 148556981 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.566011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGACG CTCCCAGGAC ATGGACCCGG ACGGTCGGGC GGCGGCTGGC GCCGCCCGCG
CTGCAGCCGG GGCTGTGCGA GCGGACGCTG CTGCTGCGCT CGCTCGACGT CGCGTGCGCC
GGGCGGCTGA CGCTGGTGAT CGGCCCGGCC GGGTTCGGCA AGACCACCGC GCTCGCGCAA
TGGCATGCGA GCCTGGTCCG GCGCGGCCAG ACCGCCTGCT GGTGCACCAT GTCGGAGGAG
GAGCGCGATC CCTCGCGCTT CCTGTGGATG CTGGCGCTGG CGCTCGAGGC GGCGGGGATC
GCGCTCGACG GCGACGTGCT GCGCACCGTG TCGGACGGGT CGGTCGGGCT GGCCTGCGAC
GCGCTGCTGA TGGCGCTCGA ACGCGCCGCG CCGAAGGGGG CGATCGTCAT CGAGGAGTTC
GAGCGGATCG ACCATCCGCC GATCGCCGCG CTGGTCGCCG AGCTGGTCGA CGGCCTGCCC
GAGGACATGC ACCTCGTGCT GAGCGCGCGC CGCAAGCCGA AGCTGCCGAT CTCGGTGCTG
CGCGTGCAGG GCCGGGTGCG GGTGATCGAC CCGGCCGAGC TGCGCTTCGG GCGGCGCGAA
CTGACCGCGC TGCTCGACGA CGGCGCCGAC GCGGAGGCGC TGGAGACGAT CGAGCAGCAG
ACCGAGGGCT GGCCGGTCGC CGTCCAGCTC TATCGGCTGT GGCGCGAGCG GGCGGGCGCC
GACGCGGTGG TGCCGAAGTC GAGCGGGCTG GCGAGCGAGG TCGCCGACTA TCTCGCCGAG
CAGATCTTCG ACGGCCTGGC CGTCGACGCG CAGGACATGC TGATCGACCT GTCGATCGCC
GAATATTGCG AGATACCGCT GGCCGACTTC ATCCGGCAGA GTCAGGACAG CGCGGCGCTG
CTCCGCCAGG TCGCCGACCA GCTTCCCGGG CTCGTCCAGC GCAGCGACGC CGAGGACGAC
CTAGTCTATC GGCTGCACCC GCTGCTGCTG GGCCATGCGC GGGCGCGGCT CGCCCTCAAG
CCGGGGCGGG CCGACCTGAT CCATGGGCGC GCGTCCGACT GGTACTGGCG CAACGCCCGC
TTCGCCGCCG CGATCCACCA TGCGGTGCTG AGCCATGACG AGGCGCTGCT GGCCCGGCGG
ATCGAGGAGC TGCCGTTCCT CGACATCCTC GGCACGGCCG GGGCGGGCGA GCTGCTCCAC
ATCCTCAACC AGGTGCCGGC GGCATGCCAG GGGCTGCCGC AGGTCCGCCT GATCACCATC
CTGCTGCTGT TCCGCAACGG CCTGTTCCCC GAGGCCGAGC AGATGCGCGC CGAGGAGGAA
CGGCTGCTGG CCGACCGCGC GGACGCGGCC GACCCGCAGG TCCGCCGGCT GCGGCTGGGG
AACCTGGCGC TCAAGCTGCT GTTCGCGGTC CATATCGACG GCTTCGTGGC CGATCACGAC
CGGCTGGTCG CCGAGATCAG GGCGCTGTCG CTCGACGCGC CGGCGACCTG GGCGTGGGTC
GAATGCCTGA GCGCGACGAT CCTCCAGATT CGCGGCGACC TCGATGCCGC CGCCGAGGCG
CTGCTGCGCG CCGGCAAGCT GTCCGCCGCG ATCGGCAAGC CGACCCCGGC GGCGAGCATG
GCGACCTGCC AGACGCTGAT CCTCGGCCTC GCGCATGGCC GGCTGGGCCA TGTCCTGGAG
ACGGTGACGG CGATCCGGCA GCCGGCGGCG GGGCAGGGGA CGGAACAGGC GGTGGGGGAG
CAGGCGCTCC ACGCCATGGC CGGGATCGCG GCGGCGGTGG TCGACTATGA GCGCGGCTAT
CGCGTGCAGG CGGCCGAGGC GCTGCGCATG GCGCTGGCCG AGTTCGGCGA GAGCGAGGCG
TGGTTCGACC AATATGCGCT GGCGCTGCCG ATCATCGTCG ACGTCACCTA TCGGCGGCAC
GGCTTCGACG CCGCGCGGCA GGAGATCGAG CGGCTGCGCG AACGGGCGAA GCGGCTGGGG
CTGCGCGGGG TGCTGGGGCT GTTGTCGACG ATCGAGCTGT TCCAGGCGGT CCGCGCGGGC
GAGCCGGCGG TCGCCGACGC GGCCGAGCCC GCCGACGATG CGACGCTGTC GTGGCGCGAA
CGCGACACGA TGCGGCTCGC GCTCGGCCGG CTGGCGATGG AGCGCGGCGC GTTCGACCGG
GCGGCCGGGC TGGCGGCGCG GGCGATCGCG GCCGGGGAAG CGGGCGACCG GCTGGGGACG
CGGATCAGGG GATCGATCCT GCTGGGCCTG GCGCGCGATC GCGGCGGCGA TGCCGACGGC
GCCGACGATG CGCTGCGCGA GGCGGTGCGG CTGTCCTACC CCGAAGGCTA TGTCGCGCCC
TTCGCGCAGG AGGGGCGATC GATCGTCCCG CTGCTGCAAC GCGCGATCGG CAAGGGATCG
GTGATCGAGC AGCGCCTGCT GGCGCAGGTC GCGCGGGCGA TCGAGCGCGA GCGCGAGTTC
GCCGCCCCCG ATGCGCTGAG CAACCGCGAG GCCGAGATCG TCGCGCACCT GGCCGATGGC
GCATCGAACA AGGTGATCGC CCGGCGGCTG GGCCTGAGCG ACAACACGAT CAAATTCCAC
CTCAAGAAAG TCTACGCGAA ACTGGGTGTC AGCAGCCGCA AGGCGGCCGC GGCCGCGGCG
GCGAAATTCG TGGCGGACGG GCGATGA
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| Protein sequence | MADAPRTWTR TVGRRLAPPA LQPGLCERTL LLRSLDVACA GRLTLVIGPA GFGKTTALAQ
WHASLVRRGQ TACWCTMSEE ERDPSRFLWM LALALEAAGI ALDGDVLRTV SDGSVGLACD
ALLMALERAA PKGAIVIEEF ERIDHPPIAA LVAELVDGLP EDMHLVLSAR RKPKLPISVL
RVQGRVRVID PAELRFGRRE LTALLDDGAD AEALETIEQQ TEGWPVAVQL YRLWRERAGA
DAVVPKSSGL ASEVADYLAE QIFDGLAVDA QDMLIDLSIA EYCEIPLADF IRQSQDSAAL
LRQVADQLPG LVQRSDAEDD LVYRLHPLLL GHARARLALK PGRADLIHGR ASDWYWRNAR
FAAAIHHAVL SHDEALLARR IEELPFLDIL GTAGAGELLH ILNQVPAACQ GLPQVRLITI
LLLFRNGLFP EAEQMRAEEE RLLADRADAA DPQVRRLRLG NLALKLLFAV HIDGFVADHD
RLVAEIRALS LDAPATWAWV ECLSATILQI RGDLDAAAEA LLRAGKLSAA IGKPTPAASM
ATCQTLILGL AHGRLGHVLE TVTAIRQPAA GQGTEQAVGE QALHAMAGIA AAVVDYERGY
RVQAAEALRM ALAEFGESEA WFDQYALALP IIVDVTYRRH GFDAARQEIE RLRERAKRLG
LRGVLGLLST IELFQAVRAG EPAVADAAEP ADDATLSWRE RDTMRLALGR LAMERGAFDR
AAGLAARAIA AGEAGDRLGT RIRGSILLGL ARDRGGDADG ADDALREAVR LSYPEGYVAP
FAQEGRSIVP LLQRAIGKGS VIEQRLLAQV ARAIEREREF AAPDALSNRE AEIVAHLADG
ASNKVIARRL GLSDNTIKFH LKKVYAKLGV SSRKAAAAAA AKFVADGR
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