| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4047 |
|---|
| Symbol | |
|---|
| ID | 5200869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4450377 |
|---|
| End bp | 4451114 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640583604 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_001264529 |
|---|
| Protein GI | 148556947 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.866851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGACGA TGCACGCGAC GCTGGACAGG GATGCGGGGG CGGAGGGCCA TGCGCTCTTC
TTCGCCGATC TGCCCGATTC GCCGGCGAAG GGACCGGCTC CCCTCGTCGT CGAGCGTTCG
GCCTATGGCG CCGATCGCGC GCCCAACTGG CCGATGATCG CCGCGATCGT CGCGCTCCAC
ATCGTCGCCT TCTACGCGCT GGTCACCTTC GACGTGATCC ATATCGCCGA GAAGAAGAAG
CCGCTGGTCG TCGACCTGAT CGCCGAACCG CCGGTGCCGC CCGCCGAGAA GCCGAAGCCA
GAGCCGGTGG TGGTCGAGAA GGTCCAGCCG GTCGTCGTGG CACCGCCGCC GATCGTCCAG
ACGCTCGCGT CGCCGCCCCC GCCGATCACG GTCACCACCA CGCCCCCGCC GCCCCGGCCG
GTCGCGGTCG CGGCGCCCCC GCCCGCCGGA CCGGTGACGG TCGGCAATCT CGACGAGCGG
CTGCTCGAGG GCAGGCCACC GCGTTATCCG GTCGAATCGC GCCGCAAGCA TGAACAGGGC
ACGGTCGTGG TCCGCCTGCT GATCGGCACC GACGGCCGGG TCGCGGATAT CTCGATCGCG
CAGAGCAGCG GCTTCGCCCG GCTCGACCAG GCCGCGCTCC AGGCGATCCG GGGCTGGCGC
TGGCAACCGA TCATCCGCGA CGGCCAGCCG GTCGAGGTGC GCGGCCTCTA CACCATGCCC
TTCACGCTGA ACGGCTGA
|
|---|
| Protein sequence | MLTMHATLDR DAGAEGHALF FADLPDSPAK GPAPLVVERS AYGADRAPNW PMIAAIVALH
IVAFYALVTF DVIHIAEKKK PLVVDLIAEP PVPPAEKPKP EPVVVEKVQP VVVAPPPIVQ
TLASPPPPIT VTTTPPPPRP VAVAAPPPAG PVTVGNLDER LLEGRPPRYP VESRRKHEQG
TVVVRLLIGT DGRVADISIA QSSGFARLDQ AALQAIRGWR WQPIIRDGQP VEVRGLYTMP
FTLNG
|
|---|
| |