Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3918 |
Symbol | |
ID | 5196241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4300698 |
End bp | 4302884 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583474 |
Product | TonB-dependent receptor |
Protein accession | YP_001264401 |
Protein GI | 148556819 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.665207 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCGTC CGTTCCGTAT CGCCGCATCT GTCTCGGCAC TCGCCATCGC CATGCCCGCC CTGGCCCAGG TCTCGCCTGA CGCCGCTACC GAAACGGCGA AGGACGACAT CGTCGTCACC GCCGCGCGCA GCATCCTGCC GGCCAATGCC CTGCCGCTGA CCATCGACAT CGTCGGCAAG TCCGAGCTCG ACCAGCAGAT GTCGATCTCC GGATCGGTGA TCGATTCGAT CGCGACGCTG ACCCCGTCCT TCTCGCCGAC CCGGCAGAAG ATGTCGGGCG CGGGCGAGAC GCTGCGCGGC CGCTCGCCGC TCTATGCGAT CAACGGCATC CCGCAGACCA CCCCGCTGCG CGACGGCAGC CGCGACGGCT TCACGATCGA CGGTTTCTTC ATCGACCGGG TCGAGGTGAT CTACGGCTCG AACGCGCTGC AGGGTGTCGG CGGCACCGGC GGTATCGTCA ACCAGGTCAC GGTCGCGCCG CCGACCGCCG AGGGGTTCGG CGGCCGGGTG CTGCTGCAGG GCAATGCCGA CAATGATTTC CGCAAGGACG GCCTGGGCGG GAAGGCCGCC GGCCTGGTCC AGTATCGCAA GGACTGCTTC GACGCGACGG TCGGCGCGGC CTATGAGAAG CGGGCGGTCT TCTACGACGG CGACGGCCGC CGGGTCGGCG TCAACCTGAC CCAGGGCGAG ACGCAGGATT CGAAGACCCT CTCGCTGTTC GGCCGGTTCG GCTACCAGCT CGGCGATACC GGCCGGATCG ACCTGATCGC CAGCCGCTAC GAGATGAAGG TCGACGGCGA CTATATCGCC GTGGCGGGCG ACAAGACGGC CGGCCTGCCG ACCAGCGCCA CGCGCGGCAA CCCGCCGCTC AAGCCCGCCG AGAGCCGCAC CGAAAGCGTC GCGCTTTCGG TCACCGACAC CGATCTCGGC GGCGGCAACT TCGTCAGCCA GCTGTTCTTC AACCGGACCC GCGACACCTT CGGCGGCGAG CCGGTCACGC AGGCGACCTT CCAGGACCCG ACGATCGCGC CGGTCGGCAC GCTGTTCGAC CAGTCGCAGA ACCGGTCGCG CAAGCTCGGC TTCAAGATCA GCTATGAGCG CGCGGTTCCC GGTTTCGAGG CGTTGACCGG CACGCTCGGC TTCGATGCGC TGTTCGACAA GACCGAGCAG CGGCTGATCG CCACCAACCG CGTCTGGGTG CCGCCGAGCG ATTTCCGCAG CCTCGCGCCC TTCGCCCAGC TCAACCTGGC GCTGTTCGAC GAGAAGCTCC GCCTGGCGGG CGGCGCGCGC TGGGAGAATG TCCAGATCAG GATCGACGAC TTCCAGACGC TCGCCTCGAC CACGGTGACG ACGGCCAATC CGAACGCTTA TGGCGGCGTC ATGGTCGGCG GCGGCAAGCC GAAGTTCGAC GACGTGCTGC TCAACGGCGG CATCATCTTC GAGCCGTGGA AGGGCATCCG CGCCTATGCC AGCTATGCCG AGGGCTTCAC CGTCGCCGAC ATCGGGCGCA TCACCCGGGC GATCGGCAAG CCCGGCATCG ACCTCGACAA TTATCTCGAC ATCAGCCCGG TCATCTCGAA CAACCGCGAG ATCGGCGTCG AGGTGAAGCG CGGGCCGCTC GATACCAGCG TCACCTATTT CTGGTCGTCG AGCAACAAGG GCCAGGTGCT GGTCAACGGC GGCGCCGGCA TCTTCAACGT GATCCGCCAG CGGGTCGAGA TCGAGGGGCT GGAGGTCAAC GCCGGGGTCC GCATGCCGAT CGACGGGCTC AGGCTGTCGG TGGGCTATGC CCATATCAAG GGCCGCTACG ATGCCAGCGC GACGCCCGAC GGCACGGCGG GGACCGACCT CGACGGCGCC AACATCTCGC CCGATCGCCT GAACCTGGCG GCCAGCTTCA ACCGGGGCGC GGTCTCGGCG CGGGTGCAGA CCAACTTCTA TCTGAGCCGG ACCTTCCGGA GCAGCGAGAT CGTGCTCGAT CCACGCAACA GGTTCGGCGG TTATGACCTG ACCGATGCGA GCATCCGCTA CCAGACCGGC CTGGGCGGGT TCACCTTCTC GGTCCAGAAT CTTTTCGACA AGCAATATAT CGACTACGCG TCCGCCACGC AGCGCCCGAC CGACAATTTC TTCAACTTCG CCGGGCGCGG CCGCAACTTC ACGCTTAGCT GGGACTATCG CTTCTGA
|
Protein sequence | MIRPFRIAAS VSALAIAMPA LAQVSPDAAT ETAKDDIVVT AARSILPANA LPLTIDIVGK SELDQQMSIS GSVIDSIATL TPSFSPTRQK MSGAGETLRG RSPLYAINGI PQTTPLRDGS RDGFTIDGFF IDRVEVIYGS NALQGVGGTG GIVNQVTVAP PTAEGFGGRV LLQGNADNDF RKDGLGGKAA GLVQYRKDCF DATVGAAYEK RAVFYDGDGR RVGVNLTQGE TQDSKTLSLF GRFGYQLGDT GRIDLIASRY EMKVDGDYIA VAGDKTAGLP TSATRGNPPL KPAESRTESV ALSVTDTDLG GGNFVSQLFF NRTRDTFGGE PVTQATFQDP TIAPVGTLFD QSQNRSRKLG FKISYERAVP GFEALTGTLG FDALFDKTEQ RLIATNRVWV PPSDFRSLAP FAQLNLALFD EKLRLAGGAR WENVQIRIDD FQTLASTTVT TANPNAYGGV MVGGGKPKFD DVLLNGGIIF EPWKGIRAYA SYAEGFTVAD IGRITRAIGK PGIDLDNYLD ISPVISNNRE IGVEVKRGPL DTSVTYFWSS SNKGQVLVNG GAGIFNVIRQ RVEIEGLEVN AGVRMPIDGL RLSVGYAHIK GRYDASATPD GTAGTDLDGA NISPDRLNLA ASFNRGAVSA RVQTNFYLSR TFRSSEIVLD PRNRFGGYDL TDASIRYQTG LGGFTFSVQN LFDKQYIDYA SATQRPTDNF FNFAGRGRNF TLSWDYRF
|
| |