| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3871 |
|---|
| Symbol | |
|---|
| ID | 5197591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4260162 |
|---|
| End bp | 4261034 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640583426 |
|---|
| Product | signal peptidase I |
|---|
| Protein accession | YP_001264354 |
|---|
| Protein GI | 148556772 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.660444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAATG CGAGTGACGC GCCTGCCGCG CCGGCCGAAC CGGCGGCGAA GGCCCCCAAG
CCGGCCACCG ACTGGTGGGC GGAGGCGCGC GGCATCTTCT GGCTGATCCT GGCGGTGCTC
GGCTTCCACA GCTTCATCGC CAAGCCCTTC TACATCCCGT CCGAATCGAT GATGCCGACG
CTGATCACCG GCGACCGGCT GGTGGTCACC AAATATCCCT ATGGCTGGTC CTATGTATCG
CCCAGCTTCC ACGTCCTGCC GTTCATCCAC GGCCGGCTGT TCGGGCGCCT GCCCGAGCGG
GGCGACATCG TCATCCTCAA GCCGCCGCAG GCCGACACCG ACTTCATCAA GCGCGTCATC
GGCCTGCCGG GCGACCGGCT CGAGGTGCGC GGCGGCGTGG TGGTGATCAA CGGCGTGCCG
GTGAAGCGCA CGCCCGAGAG CCCGGCGATG ATCGCGGTCG ACGCCAATGT GCCGTGCAAC
CAGCCCGAGG TGGCCCAGTT CCGCGTGACC GGCCCCGACG GCAAGCTCTA CTGCGCGCTG
CCGCGCTTCC GCGAGACGCT GCCCAACGGC CGCAGCTACG ACACGATCGA CCTGGGCTAC
ATGCCCGAGA TCGACGATTA TCCGGCGATC ACCATCCCGG CCGATCATAT CTTCGTGATG
GGCGACAACC GCGACCAGTC GGCCGACAGC CGCGTTCCCG CCTATCGCAA CGGGCTCGAC
GGCCCGGTGC CGTTCGAGAA TATCGGCGGC CGCGCCGAGT TCATCACCTT CTCGCTCGAC
GGCACAACCA AGCTGTGGAA CCCGCTGACC TGGTTCACCG CGCTGCGCGG CGGCCGGGCG
GGCACCAGCC TCCACCCGCA GGAAAGCCGC TGA
|
|---|
| Protein sequence | MDNASDAPAA PAEPAAKAPK PATDWWAEAR GIFWLILAVL GFHSFIAKPF YIPSESMMPT
LITGDRLVVT KYPYGWSYVS PSFHVLPFIH GRLFGRLPER GDIVILKPPQ ADTDFIKRVI
GLPGDRLEVR GGVVVINGVP VKRTPESPAM IAVDANVPCN QPEVAQFRVT GPDGKLYCAL
PRFRETLPNG RSYDTIDLGY MPEIDDYPAI TIPADHIFVM GDNRDQSADS RVPAYRNGLD
GPVPFENIGG RAEFITFSLD GTTKLWNPLT WFTALRGGRA GTSLHPQESR
|
|---|
| |