Gene Swit_3708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3708 
Symbol 
ID5196307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4070765 
End bp4071889 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content61% 
IMG OID640583264 
ProductABC-2 type transporter 
Protein accessionYP_001264192 
Protein GI148556610 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAAC ACAATAGCCA TTTCGCTTTC ACCCGGCTGC GGGCGCAGTT CATCAAGGAA 
GTGCTGAGCA TCCTGCGCGA CCCGCGCAGC CGCATGGTGG TGCTTGTGCC GCCGCTGTTG
CAACTGCTGG TGTTCGCCTT CGCCGCGACG CTGGAAGTGC GCAATGTCGA TATCGCCGTT
CACAATCAGG ATTCGGGGCG CTGGTCCTAT GAACTGATCA CGCGGCTCGA CCGGGCCGAC
TTCATTACGC AGGTCTATCG CGTGAACGAC AGCCAAGAGC TGCGCGATCT TATCGACCAG
GGCAAGGTGA TCGCGGCGCT CGATATCCAG CCGGACTTTT CGCGCGCAAT CGCCACCGGC
GACAATGGTC GCGTTCAGAT GCTGATCGAT GGCCGGCGCA GCAATTCAGG GCAGATCACC
GCTTCTTATC TCTCCGCCAT CGCTGCCGAG GTTGGCGCGG AAGCAAACGC CGGCAGTGCG
CCCGCATCGG CGGTGGCGGT GCGCAACTGG TTCAATCCCA ACCTGACCTA CCGCTGGTTC
ATCGTGCCCG GCCTCTCCGG TATCCTGGCG TTCTTCAGCG CGCTGCTCAT CACCTCGCTG
TCGATCGCGC GGGAGCGCGA ACTGGGAACA TTCGACCAGT TGCTGGTGTC ACCAACCTCC
ACGCCGGAAA TCATTATATC CAAATCCCTG CCCGCTCTGG TCATCGGCAC CATGCTCGGT
CTTCTGATGA TGGCGGCCGC TGCGGGTCCG TTCCAGATTC CGTTCAACGG CTCGTTTGGG
CTGCTGTTCG TCAGCCTGGT TCTGTTCATC CTGTCGGTGG TGGGCATCGG CCTGATGATA
TCCGCGATCA GCGCGACCCA GCAGCAGGCC ATCCTTGGCG CCTTCGCCAT CGGCGTGCCA
TCCGTTCTGA TGTCGGGCTT CGCTACCCCG GTCGAGAATA TGCCCACGCT GCTGCAATGG
CTGGCTCAGG CGATCCCCCT CACCCATTTT CTGATCATCG TGGAAGGCAG CTTTCTGAAA
GCAATGTCGC CCGGCGATAT TCTTGCGAGC CTTTGGCCAT TGGCGCTGAT CGCCCTGGTG
TCGCTCACCA CGGCCACCAT CTTCGTTCGA GGACGTCTGC AATGA
 
Protein sequence
MAQHNSHFAF TRLRAQFIKE VLSILRDPRS RMVVLVPPLL QLLVFAFAAT LEVRNVDIAV 
HNQDSGRWSY ELITRLDRAD FITQVYRVND SQELRDLIDQ GKVIAALDIQ PDFSRAIATG
DNGRVQMLID GRRSNSGQIT ASYLSAIAAE VGAEANAGSA PASAVAVRNW FNPNLTYRWF
IVPGLSGILA FFSALLITSL SIARERELGT FDQLLVSPTS TPEIIISKSL PALVIGTMLG
LLMMAAAAGP FQIPFNGSFG LLFVSLVLFI LSVVGIGLMI SAISATQQQA ILGAFAIGVP
SVLMSGFATP VENMPTLLQW LAQAIPLTHF LIIVEGSFLK AMSPGDILAS LWPLALIALV
SLTTATIFVR GRLQ