Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3653 |
Symbol | |
ID | 5197000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4013486 |
End bp | 4015801 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640583208 |
Product | TonB-dependent receptor |
Protein accession | YP_001264137 |
Protein GI | 148556555 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.465269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACA GGACGACGAC GGTTTCGCTG CTTCTGGGGA TTTCCGCGAT CGCGCTGGGC GCCGCTGCGC CGGCGGCGGC GCAGGGCACG CCCGAGGAGA CGGTGGCGAC CACGGGCGGA GGGCTCGAGG AGATCATCGT CACCGCCCGC CGCCGCGAGG AGGCGATGCA GGACACGCCG ATCTCGGTCA GCGCGCTGTC GAGCGCCTCG CTGGAGCGGT CGAACGTCCA GGCGCTCGAC GACATCACCC GCCTGATGCC GAACGTGGCG ATCCAGGCGC AGTCGGGCTT CCTGGCGGGC AACACCGCCT TCATCCGCGG CATCGGATCG CAGGAGCCGC TGCTGTCGGT CGACTCGCCG GTCGGCATCT ACATCGACGG CGTCTATATC GGGCGCAACA ACGCCTCGAA CCTCGAACTG GTCGACCTGG AGCGGATCGA GGTGCTGCGC GGGCCGCAGG GCACGCTGTT CGGCCGCAAC ACCACCGGCG GCGCGATCAG CATGGTGACC AAGAAGCCGG CCAGCGAGTT CGGCGTCGAG CAGAAGGTCA CCGTCGCCCA ATATGACGAA TATGCCGCGC GCACCCGGAT CGACACCGGC CTGCTTGGGG AGACGGGGCT CAGCGCGACG CTGTCCTACA TGCACCGGCA GCGCGACGGC TGGCTGAACA ACAAATATGC CAAGGGATCG CACACCCAGG GCGCGCTCAA CACCGATGCG GTCTGGGCGA AGGTGCATGG CGAGTGGGGC GCCTTCCAGG CGGACTACAC CTTCGACTGG ACCGACATGC GCGGCGTGCC CGGCGGTTTC CAGACGCGCT TCCTGTCGCC GCTGCTGCGG GCCTATTATG GCAACACCAC CGGCAATTCG CTGCTCGACG AGGTGCAGCA GGATTATAAC AAGAATTTCA GTGTCCGCTC GAAGGCGCTG CAGCGGGTCA AGATCATCGG CCATGCGCTG ACCCTGCAAT ATGACGTCAG CGACGACATC ACGCTCAAGT CGATCACCGG CCGCCGCACC TACAAGGCGG CGCTCGGCAC CGCCTATGCC CCGCCCGGCA TCTTCGGCAA CACCACCGCC GGTATCCAGG AAGTGCAGAT CTACTCGGCC GACGCGAAGG ACGAGGACGT CAAGCAGTTC TCGCAGGAGT TCCAGCTGCT CGGCAAGCTC GGTGACTTCA GCTATGTCGG CGGCCTCTAT TATTTCGAGG AAGACAGCAA ATATTTCAAT CCGACGAGCT ATTCGTTCGT CGTCTCGCCG ACGCTGGCGT CGAACCTGTC CTCCTCGACC ATCTTCGACT ATCAGGCGAA GTCCTACGCC GCCTTCGGCC AGGCGAGCTG GAAGCCGCAA TCGCTCGACG AGAAGCTCGA GCTCACCTTC GGCGTCCGCT ACACCAAGGA CAAGAAGGCG GTGCAGCAGA CCGCCAGCAC CGTCCGCAAC GGCAAGGCCA GCTTCGACGA CACCTCGATC AACGCGATCG TCAGCTACAA GCCGGTCGAC GACGTGATGG TCTATGCCCG CTACGGCACC GGCTATCGTT CGGGCGGCTT CAACACCCGC GCCAGCGCCA CCCAGTCCTT CGTGTTCGAG CCGGAGAAGG CGAAGACCTA CGAGGCGGGG ATCAAGAGCG AGTTCCTCGA TCGCCACGTC CGGCTCAACG CGGCGGTCTT CCACACCGAC TACAAGGACC TCCAGGTCAC CCAGTATCTC GCCACCGCGG CGGGCGGCGG CGGCTTCACC AACAACGCCT CGGCCAGGTT CCGCGGCTTC GAGGTGGAGT TGCAGGCGGT GCCGGTCGAC GGCCTGACGC TCGACGGCAG CGTCGGCTAT GTCGATCCCA AATATAACGA GATATTCTTC ATCGTTCCCG CGGCGCCCGT GCCCGGCCAT ACGCCGGGGG CCGGCGAGGT GGCCGGCGGC CTCGGCAACT ATGCCGACAT CAGCAAGTTC CCCTATGTGC CGAAATGGAC GGTCCATCTG GGCGGGCAAT ATCTGAGCGA GGATATCGGT TTCGGGAAGC TGCTGCTCAA GCTCGACTAT TCGTACAGCA GCAAGCGCTA CTTCATGACC AACGTCCTGA ACGGGCTGAA CTTCGCCGAT GCGATCGCCG ATCCCGGCCA GCACCAGTTC GATGCGCGTA TCGGTCTGGT CGAGGTGCCG GTCGCCGGCA AGTCGATGGA CATCAGCCTC TTCGTCGAGA ACCTGACCAA CGAGCACAAT ATCAGCTCGG GCATCGACTT CGGCGCGCTC GGCTTTGCCG GCAACATCTA CAGCCCGCCG CGCCGGATCG GCGTGGACGC GAAGATCAGC TTCTGA
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Protein sequence | MTDRTTTVSL LLGISAIALG AAAPAAAQGT PEETVATTGG GLEEIIVTAR RREEAMQDTP ISVSALSSAS LERSNVQALD DITRLMPNVA IQAQSGFLAG NTAFIRGIGS QEPLLSVDSP VGIYIDGVYI GRNNASNLEL VDLERIEVLR GPQGTLFGRN TTGGAISMVT KKPASEFGVE QKVTVAQYDE YAARTRIDTG LLGETGLSAT LSYMHRQRDG WLNNKYAKGS HTQGALNTDA VWAKVHGEWG AFQADYTFDW TDMRGVPGGF QTRFLSPLLR AYYGNTTGNS LLDEVQQDYN KNFSVRSKAL QRVKIIGHAL TLQYDVSDDI TLKSITGRRT YKAALGTAYA PPGIFGNTTA GIQEVQIYSA DAKDEDVKQF SQEFQLLGKL GDFSYVGGLY YFEEDSKYFN PTSYSFVVSP TLASNLSSST IFDYQAKSYA AFGQASWKPQ SLDEKLELTF GVRYTKDKKA VQQTASTVRN GKASFDDTSI NAIVSYKPVD DVMVYARYGT GYRSGGFNTR ASATQSFVFE PEKAKTYEAG IKSEFLDRHV RLNAAVFHTD YKDLQVTQYL ATAAGGGGFT NNASARFRGF EVELQAVPVD GLTLDGSVGY VDPKYNEIFF IVPAAPVPGH TPGAGEVAGG LGNYADISKF PYVPKWTVHL GGQYLSEDIG FGKLLLKLDY SYSSKRYFMT NVLNGLNFAD AIADPGQHQF DARIGLVEVP VAGKSMDISL FVENLTNEHN ISSGIDFGAL GFAGNIYSPP RRIGVDAKIS F
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