| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3622 |
|---|
| Symbol | |
|---|
| ID | 5198982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3980550 |
|---|
| End bp | 3981695 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583177 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001264106 |
|---|
| Protein GI | 148556524 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.75825 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCG AGCACAGCAT AGCCGAGCCC GACGAACTGA TCGGGCTCAT CTACCGGGGT
CCGCTGGAGA CCACGCCCTG GCAGCAGTTC CTGGGCCGGC TGGAGGAGCG GATGGGCTGC
CTCAGCGCGG GCATGGTGCT GCGCCTGAGC GGGCGCGGCC GGCCGCCGCT GCTGGTCTGG
GGCCACCGCC CCGCGCTCGC CATGGGCGAC GCCGACGAAG CGCGGCTCGC CCATGCCCGG
CTCGGCCATC TCGATCCGCT GCGCAACGCG CTGACCAAGC CCGGCGACAT CCACACGCTC
GACGAGATCA TGCCGCGCGA CACGCTGCAC GAGAACGAGT TCTACCGCCG CGTGCTCAAG
CCCTATGGCG TCGAATATGC GCTGGGCATG TACATCTCCG AGCCAGGCGG CTGGGAATGC
AATGTCGGCC TGGTCAACGA CGAGAGCCGC GGCGACTTCG ACGAGCGCGA CAAGCTGATG
CTGGCGCGGC TGCGGCCGCA TCTCGAACAG GCGCTGACCC TCTATTCGCG TATCCAGCGC
GACGGATCGG AGCTCCACGC GCTGGCCGAC ACGCTCGATC GGCTCACCAT CTCGACGATC
ATCCTGTCGG GCACCGGGCG GATCGTGCGG ATGAACGGCG CGGCGCAGCG GCTGGCCGAG
CGCGGCGACC TGATCGTCAC CGACCGCAAG GTGGTGATCC CCGACCGTGG CGAGAACAAT
ATCTTCCAGG CGCTGGTCGG GCAGGCGATC GAGGCCTGGC GCGCCGGCGA GGCGGGCCGC
TATGCCGAGG GGATGAAGAT CCGCTCGGCC GAGGACGAAC ATCTCGGCCT GCTGGTGCGC
GGGATCGATT CGCCGACCCC CTATGTCAGC GACGCGAGCC CCGCCGTCAT CCTCCACTTC
GCCGGCGACA CCAGCGAGCG CCCGATCGAG CGGCTCGTCA CCAAGATCTT CGACCTGACC
CCGGCCGAGG CGCAGCTCGC GACGCTGCTC GCCATGGGCT ACAGCCTGGC GCAGGCGGCC
GACCGGCTCG ACCTGAAGGA AAGCACCGTC CGCACCTATT GCAAGGCGAT TCTCGGCAAG
GTCGGAGTCG GGCGGCAAGC CGACCTCGTC CGGCTGATCC TGCGCAGCGT GGCGGTGCTG
GGCTGA
|
|---|
| Protein sequence | MATEHSIAEP DELIGLIYRG PLETTPWQQF LGRLEERMGC LSAGMVLRLS GRGRPPLLVW
GHRPALAMGD ADEARLAHAR LGHLDPLRNA LTKPGDIHTL DEIMPRDTLH ENEFYRRVLK
PYGVEYALGM YISEPGGWEC NVGLVNDESR GDFDERDKLM LARLRPHLEQ ALTLYSRIQR
DGSELHALAD TLDRLTISTI ILSGTGRIVR MNGAAQRLAE RGDLIVTDRK VVIPDRGENN
IFQALVGQAI EAWRAGEAGR YAEGMKIRSA EDEHLGLLVR GIDSPTPYVS DASPAVILHF
AGDTSERPIE RLVTKIFDLT PAEAQLATLL AMGYSLAQAA DRLDLKESTV RTYCKAILGK
VGVGRQADLV RLILRSVAVL G
|
|---|
| |