| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3617 |
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| Symbol | |
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| ID | 5198333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3975106 |
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| End bp | 3976839 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640583172 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001264101 |
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| Protein GI | 148556519 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.320662 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAAAACC AGCGCAACAT GATCCTCGCG ATCGTCCTGT CGGCGCTCGT CCTGTTCGGA
TGGCAGTTCC TCGGTGATCG TTTCTTCCCG CCCGCCAAGC CGCCGGTGAC GAAGATCGAG
GGCGGCCAGG AGAAGGTTCT TCCCCAGCCC GGCGCCGATC CGGCGGCCGC CGGCCCCAAG
GCGATTCGCG CCCGCGCGGC GGTGCTGCGC GAGACCCCGC GCGTCGCGAT CGACACGCCG
AAGCTCGCCG GCTCGATCAA CCTGAAGGGC GCGCGGATCG ACGACCTGGT GCTCAAGGCC
TATCGCGAGA CCGTCGCGAA GAACGCGCCG CCGATCCGCC TGCTCTCGCC GCTCGGCTCG
CCCGCGGCCT ATTATGCCGG CTTCGGCTGG ACCGGCGACG GCGTCGACGC GCCGGGCCCC
AACACCGTCT GGACCGCGAG CGGCACGGCG CTGACGCCCG AGACGCCGGT GACGCTGAGC
TGGACCAACA CGCGCGGCCA GCGCTTCGAG ACCGTCATCG CGGTCGACCG CGACTATATG
TTCACGATCA CCCAGAAGCT GGTCAACGGC GGCGCGGGCG CCGTCGCGGC GCGGCCCTAT
GGCCTGATCT CGAAGGACGG CGTGTCGAAG GACCCGTCGA GCTGGACGCT CCACACCGGC
CCGATCGGCG TGTTCAACGA TGCCGCCAAT TACGACCTCA GCTTCAAGAA GCTCGACGAG
GCGGGCCAGC CCGGCATCCG CTTCGCCAGC ACCGGCGGCT GGCTGGGCTT CGGCGACAAA
TATTGGCTGA CCGCGCTGGT GCCCGACAGC AAGGCGTCGG TCGACGCCGG CTTCCTGTCG
ACGGCGCCGC AGGTCTACCA GGCGGTCGAG AGCGGCCGCG CGCTGGTGAT CGCGCCGGGC
CAGGCCGGCT CGGTCTCGCA GCGCTTCTTC GCGGGCGCCA AGGAAGTGGC GCTGCTCGAC
CGCTACGAGA ATGACCAGGG CGTGCCGCTG TTCAGCCGCG CGATCGACTG GGGCTGGTTC
CGCGTGCTCG AGAAGCCGAT CTTCTGGGTG CTCGACCAGG TGTTCAAGCT GGTCGGCAAT
TTCGGCGTCG CGATCATCAT CCTCACCTTC CTGGTGCGCG GCCTGATGTT CCCGATCGCG
CAGAAGCAGT TCCGCTCGAT GGCCGGCATG CGCCGCGTCC AGCCGAAGAT GAAGGAGCTG
CAGGAGCGGC TGAAGGACGA CAAGCCGCGC CTCCAGCAGG AGCTGCTCAA GCTCTACCAG
GAGGAGAAGG TCAATCCGCT CGCGGGCTGC CTGCCGATCC TCGTCCAGAT CCCGGTCTTC
TACGCGCTCT ACAAGGTGCT GATGGTGACG ATCGAGATGC GGCACCAGCC CTTCGTGCTG
TGGATTCGCG ACCTGTCGGC GCCCGATCCG CTGCACGTCC TCAACCTGTT CGGGCTGCTC
GACTTCACCC CGCCGGCGTT CCTCGGCATC GGCGTGCTGG CGCTGCTGCT CGGCGTGTCG
ATGTGGCTGC AGTTCAAGCT CAATCCGCAG CCGATGGACG ACGCGCAGAA GCAGGTGTTC
GCGCTGATGC CGTGGATCAT GATGTTCATC ATGGCGCCGT TCGCGGCCGG CCTGCTGATC
TACTGGGTCA CCTCCAACTT CCTGACGATC GCGCAGCAGG CGTGGCTCTA TCGCCAGCAT
CCGGTCGAGC CGGTGCCGGC CTCCGCCACC ACCATCGTCG CGAAAAAGAA GTGA
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| Protein sequence | MENQRNMILA IVLSALVLFG WQFLGDRFFP PAKPPVTKIE GGQEKVLPQP GADPAAAGPK
AIRARAAVLR ETPRVAIDTP KLAGSINLKG ARIDDLVLKA YRETVAKNAP PIRLLSPLGS
PAAYYAGFGW TGDGVDAPGP NTVWTASGTA LTPETPVTLS WTNTRGQRFE TVIAVDRDYM
FTITQKLVNG GAGAVAARPY GLISKDGVSK DPSSWTLHTG PIGVFNDAAN YDLSFKKLDE
AGQPGIRFAS TGGWLGFGDK YWLTALVPDS KASVDAGFLS TAPQVYQAVE SGRALVIAPG
QAGSVSQRFF AGAKEVALLD RYENDQGVPL FSRAIDWGWF RVLEKPIFWV LDQVFKLVGN
FGVAIIILTF LVRGLMFPIA QKQFRSMAGM RRVQPKMKEL QERLKDDKPR LQQELLKLYQ
EEKVNPLAGC LPILVQIPVF YALYKVLMVT IEMRHQPFVL WIRDLSAPDP LHVLNLFGLL
DFTPPAFLGI GVLALLLGVS MWLQFKLNPQ PMDDAQKQVF ALMPWIMMFI MAPFAAGLLI
YWVTSNFLTI AQQAWLYRQH PVEPVPASAT TIVAKKK
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