Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3535 |
Symbol | |
ID | 5197861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3891896 |
End bp | 3894700 |
Gene Length | 2805 bp |
Protein Length | 934 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640583090 |
Product | tetratricopeptide TPR_4 |
Protein accession | YP_001264019 |
Protein GI | 148556437 |
COG category | [S] Function unknown |
COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.155601 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCATGC GAGCGATGAT TCTGGCGACG GCGCTATCGA TGGCGCCGGC CGCCCAAGGG ATGGCGGCAA CGCAGGATCC GATCGCGGTC GCCCGGTCGA TCGACATCGA GGCCGACCCC GCCGGCGCGG TAGCGGCCTG GCAGGCGGCC CTGCCCGCCG CCCGCGCGCG CTTCCGCGCG ACGCCGGCGG AGCTGGGCCA GGTGCTGGTG CGCTACGGCT CGGCGCTGAT CGGCGTCGGC CGCGACAAGG AAGCGCTGCC CCTGCTCGAG GAAGCCGCCC CGTTGCTGGC CGTGCTGCCG CCGGACGATC CGGCGCGGCT CACCGGTGCG ATAGCGCTGG CGCTGGGCCG CGCGTCCGCC GGCCGGACCG CCGAGGCCGT CGCCATGCTG GAGGAGGTGG CGGCGATCCA GCGCGCCGCT GCGCCGGGCG GCAGCACCGC GCTGGCCGAG ACATTGTTCA ACATCGGATC GGTCGAACAG CAGGCGGGGC ATCTCTCCAC CGCCGCCGAA CGGGTGGAGG AAGCCCTGGC GCTGCACCGC CGCCTGTCGC CGCCGGATGC CGAGGTCACG GTCGGCACGG CCACCAGCCT GAGCTCGATC TACACCCAGG CGGGCCTGCT GGCGAAGGCG GAGGATGTCG CGCGCGATGC GCTGGCGATG GCCGCGCGCG GCCTGCCGCA GGATCATCCG CTGACGATGA TCACCCTGTC CAACTATGCC GCCGTGCTCG ACACCCAGGG ACGCTGGCGC GAATCCGAGC CGCTCTATCG GCGGCTGCTT CCGCTGCGCA TCGCCAAGCT CGGCAAGGAG GCGATCAGCA CCGCCATCAC CGAATCGAAT TTCGGCCGGG CGCTGCGCCT GTCCGCGCGC CCGGAGGAAG CCCTGCCCCT GCTCGAGGAA TCGGTGCGCG TCGCCGAACG CAAGCTGGGC GCCAGCGATC CCCGGCTCAA TCAGTTCCGC GAGAATCTCG CCGACGATTA TCGCGACCTC GGCCGCCTGG CCGACGCGGT CGCCCTGCGC CGCCAGGCGA TCGCGGCGTT CAGGGTCGAC TTCCCCCGGC ATTTCCGGCT CGCTTCGCTA CAGGAGGGGC TGTCGGGCGA CCTCGCCGCG CTGGGCGACA TGGCGGCCGC GCGGGCCGAG ATCGAACAGG CGCAGGCGAT CCGCCACGCC ACGCTGGCCC CCGATCATCC CGCGCTGCTG GGCGGCGAGA TCGCGGCGGG CCATCTTCTG GCGCGCGCGG GCGACGGGAC GGCCGGCCTC GCCCGCGCGC TGCCGGCCTA TCGCCGGCTC GCCGCGATCG CCAACGCCAA CCAGACCGAG ATCAGCCGCG ACCTGGTCTT CCGCGGCGCC TTCGAGACGA TGGCCCGGCT CGCCTGGCTG ACGCAGGACC AGCCGCTGGC GCTCGACGTC GCCCAGCGGC TGGTGATCGG CGACAGCGGC CGCGCTATCA CCGCGGCGCT CGCCCGCGGA CGGAGCGAGC AGGCCCAGCG CGTCCGCGCC CGCCAGGACG CCACGGCCCG CCGCGCGGCG CTCAGCCGCG TCGCCCTCGA ACGCTATGGC CGCGATTCCG CCGGCTACGA AGCCGCGCTG GCCGAAATCG CGAAGATCGA TGCCGCAATG ACCGGCCAGA CCGAAGCGAC GCGGGACATG ATCGTCGATA TGGACGGCCT GCGCGGCACG CTCGATCGCG GACAGGCCCA GCTCTATTTC GTGCAGCTCG ACGATCGGCT GTTGTCGCTC GCCGTCGACC GCGACCATGT CGCCTTCGGG GACAGCGCGA TCGGCGACCG CGCGCTTCAC GGCCTCGTCG CCGGCCTGCG CGGTTCGATC GATACCGGCC AGCAAGCCCG CGGCGCGATC GCCGACGGCG GTGAGGCCCC AACCTATGAC GGCGATGCCG CCGCCCGGCT GTACGACCTG CTGCTCCACG GAGCGCCCCG GCGGATCGCC GAACACAACC CACGCTGGCG CATCGCGACG AGCGGGTCGC TGCTGGCGGT GCCCTTCGCC GCGCTGGTCA CCCAGCGACC GGCGGCCGGA CGCGCGCCGC GCTGGGTGAT CGACGATCAT GCGATCCTCC TCGCCGCCGG CGGCTCCTCG CCCGACGGCG CGTCGCCGGG ATCGGGACGG TTCGTCGGCA TCGGCGCGCC GCTGCTGAAG GGGAGCGCCA CGGGCGGCGC ACGCACCTAT CGCGATGCCG GGGGCGTGGT GCGGGACATC GCCGCCCTCG CCCCGCTTCC CGGCGCGGCG CATGAGCTGG CGGCGATGCG CGCGAAGATC GGCGGCCCGG ACAGCGTGGT CCTGCTCGGC GCCGACGCGA CCGAAGCGGC GGTGCGCGGC ACCCGCCTGA CCGATGTCAG GGTTCTCACC TTCGCGACAC ACGGCCTGGT CGCGGGCGAC GTCACCGGCC TGCTCGAACC CGCGCTGGTG CTGACCCCGG CGGCGCAGGG CGACGCCGAC GACGACGGCC TCCTCACCGC CTCGGAGATC GCGCAGCTCA CCACCGACGC CGCGCTGGTG GTGCTGTCCG CCTGCGACAC GGCGGCCGGC GATTCCCGGG ATGCGCCGGC GCTGTCCGGG CTGGCGCGCG CCTTCTTCTA CGCGGGCGCC CGGTCGCTGC TCGTCAGCCA CTGGCCCGTG CGGGACGACA TCGCCGCCCG CATCACCGTC GCGGTGGCGC GCGACGGACG GGCCGCGCCG GAAGAAAGGC TGCGCCGCGC GATACTGGAT ATCCGCCGTG ATCGTCGCAT GGCGGGCGCG GATCGGCCCG AGACCTGGGC GCCGTTCACC CTGGTCAGCC GGTAG
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Protein sequence | MVMRAMILAT ALSMAPAAQG MAATQDPIAV ARSIDIEADP AGAVAAWQAA LPAARARFRA TPAELGQVLV RYGSALIGVG RDKEALPLLE EAAPLLAVLP PDDPARLTGA IALALGRASA GRTAEAVAML EEVAAIQRAA APGGSTALAE TLFNIGSVEQ QAGHLSTAAE RVEEALALHR RLSPPDAEVT VGTATSLSSI YTQAGLLAKA EDVARDALAM AARGLPQDHP LTMITLSNYA AVLDTQGRWR ESEPLYRRLL PLRIAKLGKE AISTAITESN FGRALRLSAR PEEALPLLEE SVRVAERKLG ASDPRLNQFR ENLADDYRDL GRLADAVALR RQAIAAFRVD FPRHFRLASL QEGLSGDLAA LGDMAAARAE IEQAQAIRHA TLAPDHPALL GGEIAAGHLL ARAGDGTAGL ARALPAYRRL AAIANANQTE ISRDLVFRGA FETMARLAWL TQDQPLALDV AQRLVIGDSG RAITAALARG RSEQAQRVRA RQDATARRAA LSRVALERYG RDSAGYEAAL AEIAKIDAAM TGQTEATRDM IVDMDGLRGT LDRGQAQLYF VQLDDRLLSL AVDRDHVAFG DSAIGDRALH GLVAGLRGSI DTGQQARGAI ADGGEAPTYD GDAAARLYDL LLHGAPRRIA EHNPRWRIAT SGSLLAVPFA ALVTQRPAAG RAPRWVIDDH AILLAAGGSS PDGASPGSGR FVGIGAPLLK GSATGGARTY RDAGGVVRDI AALAPLPGAA HELAAMRAKI GGPDSVVLLG ADATEAAVRG TRLTDVRVLT FATHGLVAGD VTGLLEPALV LTPAAQGDAD DDGLLTASEI AQLTTDAALV VLSACDTAAG DSRDAPALSG LARAFFYAGA RSLLVSHWPV RDDIAARITV AVARDGRAAP EERLRRAILD IRRDRRMAGA DRPETWAPFT LVSR
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