| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3510 |
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| Symbol | |
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| ID | 5196249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3865733 |
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| End bp | 3866626 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583065 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001263994 |
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| Protein GI | 148556412 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.426579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.148834 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCGC TGGCCTTCCT CTGGTTCCTG CTGGCGATCG TCGCGGTCGC GACGATGGCG
CGGGGCATGG TGCTGCTCGC CGCGATGCAG AGGGTCGAGG CGCGCATCGC GCGGACCGTG
TCGGCGCAGG CGGCGCGGCC CCTCTGGGGC GGTCTCAAGC TCCCCGCCTT CCTCGCCCCG
CGCGGCCGCG ACGGCAGCGA GATCGCTCGC GAGCTGCGCG AGGCCGGCAT CCACCATCCG
CGCGCGATCG AATATTTCCT GTGGCTGCGC CTCGGCGCGA CCGCCGTCGC CTGCGGCCTC
GCCGCGATCG CCAATCTGGT CGCGACCGGC GCGCCGCTGT CGCGCCCGGT GCCGGTCATC
CTCGCCGGCG CGGGCGCCTA TCTGCTGTCG AAGCGGCTGC TCCATTTCCT CAAGGGCGTG
CGGCAGCGCG CGATCACCGC CGAATTCCCC TTCCTGCTCG ATCTGCTGCA GATGATGCTC
GAAAGTGGCC TGAGCCTCGA CCAGTGCTTC CGCTCGATCG CCACCGAGGA GAATGAGGCG
ACCCCCAGGC TGGCCGCCAC CGTCCGCCGG CTGGTGTTCG ACCTCGATCG CGGCATGAGC
TACGACGCCG CCCTCGGCCG CTGGGCCGAG CGCACCGCGG TCGGCGGCGC GAAGGAACTG
GCGTCGCTGT TCCAGCAGGC GCTGCTCCAG GGGACCGAGC TGGCCCCGGC GCTGCGCACC
TTCACCCGCG AGTTCACCGA GCGCCGCATC GCCCATGCCC GCGAGAGCAT CGGCCGCATC
TCGGTCCAGA TGGTGCTGGT GCTGATCGCC TGCTTCCTGC CCGCCATCTT CATCGTCGTG
GGCGGTCCGC CCGTGGCGAG CCTGTTCGAC ATGATCCGAT CGGAAGCGCG ATGA
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| Protein sequence | MDALAFLWFL LAIVAVATMA RGMVLLAAMQ RVEARIARTV SAQAARPLWG GLKLPAFLAP
RGRDGSEIAR ELREAGIHHP RAIEYFLWLR LGATAVACGL AAIANLVATG APLSRPVPVI
LAGAGAYLLS KRLLHFLKGV RQRAITAEFP FLLDLLQMML ESGLSLDQCF RSIATEENEA
TPRLAATVRR LVFDLDRGMS YDAALGRWAE RTAVGGAKEL ASLFQQALLQ GTELAPALRT
FTREFTERRI AHARESIGRI SVQMVLVLIA CFLPAIFIVV GGPPVASLFD MIRSEAR
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