| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3463 |
|---|
| Symbol | |
|---|
| ID | 5198467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3800449 |
|---|
| End bp | 3801018 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583011 |
|---|
| Product | cell wall hydrolase, SleB |
|---|
| Protein accession | YP_001263947 |
|---|
| Protein GI | 148556365 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3773] Cell wall hydrolyses involved in spore germination |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0100975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA AACTGGCTCA ACACCCGCTC ATGCTGGCTG CGATGTTCGT CGTTGCCGCC
ACGGGCGCGA TGGGCTTAGC GGCCATTCCG GCGTCGACGC CGACGCTGGC TTATGAAGTT
ACACCCCAGT TGGTGGCCGA CGACGTCGTC GCCGACGACG GGATCGACCA GGTCCTCTTC
AAGGAGGCGG TCACCACCAC CAACGTCGAC AGGCAGCTCG AATGCATGGC CAAGGTCGTG
CTGCACGAGG CGGCCAACCA GTCGCGCAGC GGCCAGCTCG CGGTCGCCCA GCTGATCATG
AACCGCGTCG GCCAGGATCG CTTCGGCGAG ACCGTGTGCG AGGTGGTCAA CCAGCCCGGC
CAGTTCTTCC GCACCGCGGC CTACAATCCG CGCCGCGACA CCGATCGCTG GGCCACCGCG
GTCGAGGTTT CGCGGCAGGC GATGGCCGGC AATGGCGACC AGGTCGTCCC CGGCGCCGTC
TTCTACCATT CGGCGCACCA GTCGCCGAAC CGCTTCTTCC GGACGCGCGA GCGCCTGACC
ATGGTCGGCG ACCACGTCTT CTATCGTTAA
|
|---|
| Protein sequence | MTAKLAQHPL MLAAMFVVAA TGAMGLAAIP ASTPTLAYEV TPQLVADDVV ADDGIDQVLF
KEAVTTTNVD RQLECMAKVV LHEAANQSRS GQLAVAQLIM NRVGQDRFGE TVCEVVNQPG
QFFRTAAYNP RRDTDRWATA VEVSRQAMAG NGDQVVPGAV FYHSAHQSPN RFFRTRERLT
MVGDHVFYR
|
|---|
| |