Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3336 |
Symbol | |
ID | 5199892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3664922 |
End bp | 3667147 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640582881 |
Product | TonB-dependent receptor |
Protein accession | YP_001263820 |
Protein GI | 148556238 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0286811 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGCG TGCTTCTGTC CGCAGCAGCC TCAATCGCAG CCATCGCCAC CGCCGGAACG GGCACCGCAT TCGCGCAGAA TGTCGTCGAC GCCCAGGATG CCGACGGCGT GCCCGACATC GTCGTCACCG CGACCCGCAT GGGCGAGACC CAGCTCCAGT CGACGCCGAT CGCGGTGACC GCGCTGGGCG GCGACCAGCT CGACGCGCGC GGGGTGCGCG ACGTGCAGGA CCTGAAGGCC TATGTCCCCT CGCTCCAGGT GTCGGACCTG TCGGGCTACA CCCAGCTCTT CATCCGCGGC ATCGGATCGA ACATCGTCTT CATCGGCTCC GATCCCAGCA CGACGATCCA CAGCGACGGC ATCTATCTCG CCCGGCCGCT CAGCTATCTC ACCGACTTCC TCGACGTCGA GCGGGTCGAG GTGCTGCGCG GGCCGCAGGG CACGCTCTAC GGCCGCAACT CGGTGGGCGG CACGATCAAC GTCGTCTCGC GCAAGCCGTC CGACACGCTG CAGGCGCAGG CGCAGTTCGG CTATGGCAGC TATGACCGCT ATGCCGCGCA GGGCTATGTC TCCGGCCCGA TCGCGGGCGG GGTGCGGGCG AGCCTCGCGG TCGACGTCTC CGGCCACGAC GCCTTCCGCA AGAACATCTC GACCGGCAAC GACGCCGAGG ACCTGAAGTC GCGCGGCGTG CGCGGCCAGC TGCTGATCCC GGTCGGCGAC GGCGAATGGA CGATCCGCGC CGACTGGTCG CGCCAGTCGG GCGCGTTCGG CGCCTATCCC AAGCTGATCC GGCCGACCGG CAACCCGTTC GACGACGCGA TCCTCGGCGA TTTCGACAAG GTGTCGATGA ACCGCGACAA TTTCACCGTG CTCAAGAATT ACGGCGCGGC GAGCGACCTG GTGCTGCCGC TGACCGACTC GATCAAGCTG CGCTCGCTGA CCGGCTACCG CGCCTTCCGC GGCTCGATCG AGACCGACGC CGACGCCAGC TCGATCGACA TATTGCGCAA CCTGATCTCG CCGATCCGGC AGCACCAGTT CAGCCAGGAG TTCACCCTGC TGGGCGACAC CGGCCCGCTC GAATGGGTGC TCGGCGCCTA TTATTTCAAC GAGCGCAACC GCGAGCCGCT GACCCTCGCG CTGTTCCCGT TCGGCGCGTC GCACATCCAG CGGCCGCTGC TCAAGGCACG CTCGATCGCG GGCTTCGCGC AGGGCGAGTA CAAGCTGTCC GACCAACTCT CCTTCATCGC CGGCCTGCGC TACACGCGCG AGCGCAAGGC CTATGCGATC AGCGACTATT TCACCGCCTC GACCGATCTC GACCCGGCGG TGGCGGAGAA GGGCTTCGTG CTGGCCGGCA TCCCCGGCCT GCCCGATCCG TTCACCGTCG ACGCGCGCCG CCACGACGAC GCCTTCACGC CGAAATTCGG GATCACCTTC AAGCCCACCG AGCAGGTTCT GCTCTACGCA TCGGCGACGC GCGGCTTCAA GAGCGGCGGC TTCGACTATG GCAGCAGCAA CGCGGCCGAC GCCGCTGCGG GCTACGGCCC CGAAAAGCTC TGGTCCTACG AGCTCGGGCT GAAGAGCGAC TGGCTCGACC GGCGGCTGCG GGTCAACCTG ACCGGCTTCT ACTACGACTA TACCGACCTG CAGGTGCAGA GCTACGTCCA GATCGGCGCC TCGTTCGGCG CGCGGACCCA GAATGCGGCG ACCGCGCGGG TGAAGGGCCT CGAGGCGGAG ATCGTCGCCC GCCCGGTCCG CGCGCTCGAA CTGTCGGCGA ACGTCGCCTG GCTCGACGCC GAATATCGCC GCTACCCCAA CGCCTTCGTC AGCTCCTTCG GCGCGTTCGA CGCATCGGGC AAGCGGCTGA ACAACGCGCC GCGCTGGTCG GCCACCTTCG GCGCGGCCTA CAGCTTCGAC CTGGCCGGGT CGGGCAAGCT GACGCTGGGC GCCGACGCGC ATGTCCAGAG TAGCATCTAC TTCACCGCCG CCAATGACGG GGTGGGCGCG GTCTCCGGCT ATGCCGAGCA GCAGAAGGGC TATGGCATCG TCAACGCGCG GATCGGCTGG ACCAGCCCCG ACGACCGCTG GAAGGCGCAG CTGATCGCCA GCAACCTGTT CGACAAGGAC TATATCGTCG GCACCGCCAA CTACACCGCC GCGATCGCCG CCCGGCAGGG CCGCCCGCGC GAGGTGCTGG TCCAGATCGG CTACGCCTTC CGGTGA
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Protein sequence | MKRVLLSAAA SIAAIATAGT GTAFAQNVVD AQDADGVPDI VVTATRMGET QLQSTPIAVT ALGGDQLDAR GVRDVQDLKA YVPSLQVSDL SGYTQLFIRG IGSNIVFIGS DPSTTIHSDG IYLARPLSYL TDFLDVERVE VLRGPQGTLY GRNSVGGTIN VVSRKPSDTL QAQAQFGYGS YDRYAAQGYV SGPIAGGVRA SLAVDVSGHD AFRKNISTGN DAEDLKSRGV RGQLLIPVGD GEWTIRADWS RQSGAFGAYP KLIRPTGNPF DDAILGDFDK VSMNRDNFTV LKNYGAASDL VLPLTDSIKL RSLTGYRAFR GSIETDADAS SIDILRNLIS PIRQHQFSQE FTLLGDTGPL EWVLGAYYFN ERNREPLTLA LFPFGASHIQ RPLLKARSIA GFAQGEYKLS DQLSFIAGLR YTRERKAYAI SDYFTASTDL DPAVAEKGFV LAGIPGLPDP FTVDARRHDD AFTPKFGITF KPTEQVLLYA SATRGFKSGG FDYGSSNAAD AAAGYGPEKL WSYELGLKSD WLDRRLRVNL TGFYYDYTDL QVQSYVQIGA SFGARTQNAA TARVKGLEAE IVARPVRALE LSANVAWLDA EYRRYPNAFV SSFGAFDASG KRLNNAPRWS ATFGAAYSFD LAGSGKLTLG ADAHVQSSIY FTAANDGVGA VSGYAEQQKG YGIVNARIGW TSPDDRWKAQ LIASNLFDKD YIVGTANYTA AIAARQGRPR EVLVQIGYAF R
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