| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3192 |
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| Symbol | |
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| ID | 5198883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3507290 |
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| End bp | 3510400 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640582738 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001263677 |
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| Protein GI | 148556095 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.080394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGCGGA TCAACCGTCT CTCCATGGGG CTCGGCCTGC TCGCGGCAGC GGCGCTCGCG
CTTCCCTCGG CGGCGCCGGC GGCGGGCCAG CCCGGCAGCC TGTCGTTGCG CAACAGCTTC
CGGATCGGGT CGACCGGCGT GCTCTGCACC GCGCAGATCC GCTCGGCGAG CCCGGTGCTG
TCGACGATGT TCGACCGCGG CTATCGGGTG GTGTGCCGCG ACGCCGCGGC TCCGGTCGGC
CGGCTGTTCG CGCTGCGCAA GGGCGGCGAC GACGCGGTCG CGCGGGCGAT CGCCCATGCC
GAAACCCCGC TGACCTGCCA GGCGCCGGCC AATGCCTCCA TCCAGGGCCT CGGCAACGTC
CAGGTCCGCG ACTGCGTCGA CGCGAGCCAG CTCGCCTACA AGGTCTATGC CTATTCCAGG
GGGCGGACGG TCTATGTCGC CGACGGCCTG GGCGGTTATG ACAGCGCCCT CCAGCTCGGC
CTGCGGACGA TCGTCGCCGA TGCGATCGTC AAGGGCGAGG TGCAGGTCGC GACGACCTCG
GCCGGCGATC CCGCCGCCTT CGCGCGCGTC CAGGCGGGCG CGCTCGACAG CGACAGCGCG
CTGAGCGAGG CCTATGCCCG CAACAATGAA GGCTCCTACG CCGAGGCGGC CGAGTTCTTC
GAGGCGCTGG CCGAGCGCGA CGCGTCGGGC ACGAGTACGG ATTCGCACCT GCCCGAATAT
CTCGCCAACC AGGCGTTGCA GGAATCGAAC CAGCGCAGCT TCAGCACCGC CGACGCGCTG
TTCGCGCGCG CCGCGACCCC GTCCGCGCTC GCCGATCCGG TGGTCGGGCG GATATTGCGC
AACTCGCATG CGCTCCACTA TCTCAACCAG AGCAAGGTGC AGCAGGCGAT CGCCGAGCTG
AACAAGCCGG TCGTCGAGAT CGAGAGCAGC GCTGTCGCCG ACGCCAGGCT GAGCCGGGGC
GAGATCAGCG ACGAGATCGC CGCCGACCTC AACCGCGAAG GCAGCGCGAT GCGCCAGCTC
GGCGCGCTCG ACGGCCAGCT CCAGCCGTTC GAGAAGGCGC AGATCCTCGA TGCGCAGGCG
TTGCAGCTTC GCGGCGTCGC CTATCGGATC GACGGCAATT TCCCGAAGGC CAAGGCGGCC
TTCGCCGAAG CGATCAACGC GATGCAGGCG ATCCGCGAGG GCCGGATGAA CAGCACCGGC
TGGCTGCGGG CGAGCATCCA GTCCGAGCTG GGGCTGATCG CCGAGGCCGA GGGCAATGTC
GGCGAGGCCG AGCGCCTCTA TGCCGACGCG CTCCAGGTCG TCGAGATCCA GCATCCGAAC
TCGGCGGTGT CGCTGGGCGC CAAGGCGCGC TTCGCGGGCT TCCTCAGCCG CCACGGCCAG
ACCGACCGGG CGGCGACGAT GTACGGCCAG GTCGTGTCCG AGGCGGAGAG CCTGCCCGGC
GCGATGGCGT CGATCCGGAC CCTGCTGCGG CCCTATTTCC GCCTGCTGGC GGCGCGCGCG
GCGACCGATC CGACCGCGGT GACGCGGATG TTCGGCGCGA GCCAGGTGAT GCTGCGCCCC
GGCATCGCCC AGACCCAGGC GCTGCTCGCC CGCGAGCTGT CGGGCGGCGA CGACGAGGCG
GCCAGCCTGT TCCGCCAGTC GGTGACGCTG TCGCGCTACA TCGCCCGCGC CACCGGCGAG
ATCGCGCGGA TGACGGCCAC CCCGAACCCG GCCGAGCGCC CCGCCCTGGC GGAGGCGCAG
GCCCGTCTCG CCCGCTATTC GCGCGACCAG ACCGCGTTGC AGGCGAAGCT GGCCCAGTTC
CCGCGCTACC GCGTCCTGTC GCCGCAGACC ATGTCGGTCG AGGAGCTGCA GAAGGCGCTC
CGGCCCGGTG ACGGCTATTA CAAGGTCACG CTGGTCGGCG ACGACATCTA TGCGATGTTC
GTCGCCCAGG GCGTCGCGCG CGCCTGGAAG CTCGACATGA CGGCCAAGCA GCTCGCCGAC
GTCGTCGCGC AGATTCGCGA TTCGGTGGTG AAGATCGAGA ATGGGCAGGT CGCGACCTAT
CCGTTCGACG TCGTCCTCGC CCGCAAGCTC TACGTCACCC TGATGGGGCC GGTCGACGCG
GACATGCACA AGGTCACCAA CCTGATCTTC GAGCCCGACG GCCCGCTGCT CCAGCTTCCG
GCCAACCTGC TGCCGATCGA CCAGGCCGGC GTCGACGCCT ATCTGGGCCG GCTGAAGAAG
CCGAACGCCG ACGATTTCGA CTTCCGCGGG GTCAACTGGC TGGGCCGCGA CCGCGACATC
TCGACCGTGG TCAGCCCGCG CTCGTTCGTC GACGGCCGCG ACGTCGCCAG CTCGAAGGCG
ATCAAGGCCT ATCTCGGCCT GGGCGAGAAT GCCCGGCCGG CGCTCAACCC GCTGTTCGTC
CCGCCGCCGG CGATGGCCGA TCCCTGCGCC TGGCCGCTCG GCAACTGGAA CAATCCGATT
TCCGCGTCCG AGCTTTATCT GGCGAGCGGG ATCATCGGGG CGGACAAGTC GCGGCTGGTG
ATCGACGCGG CCTTCTCCGA CTCGACGATC ATGGGGATGA GCGACCTCAA CGAATATCGC
ATCATCCACT TCGCGACCCA CGGCCTCGTC ACCGCGCCGC GCCCCGAATG CCCGGCGCGC
CCGGCGCTGC TGACCAGCTT CGGCGGCGGC ACCTCGGACG GGCTGCTGTC GTTCAAGGAG
ATCTTCGACC TCAAGCTCGA CGCCGACGTG GTGATCCTGT CGGCCTGCGA CACGGCCGGC
ATGGCGACCG TCTCGGCGAC CCGCGAGGCG GGCATCACGA CCGGCGGCAA TTTCGCGCTC
GACGGCCTCG TCCGCGCCTT CGTCGGCGCC GGCGCCCGCA CCGTGATCGC CAGCCACTGG
CCGGTGCCCG ACGACTATAA CGCGACCAAG CGGCTGATCA GCGGGCTGTT CACGGCGCCG
CCGGGAACGC CGATGGCGAC CGCGATGCGG CAGGCGCAGC TCGGCCTGAT GGACGACGCC
AACACCTCGC ATCCCTATTA CTGGTCGGCC TTCGCGATCG TCGGCGACGG CGAGCGGCCG
TTGCTGCCGA CCGGCGCCGC GCCGGGCGCC GCCGTCCAGG CGACCCGCTG A
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| Protein sequence | MTRINRLSMG LGLLAAAALA LPSAAPAAGQ PGSLSLRNSF RIGSTGVLCT AQIRSASPVL
STMFDRGYRV VCRDAAAPVG RLFALRKGGD DAVARAIAHA ETPLTCQAPA NASIQGLGNV
QVRDCVDASQ LAYKVYAYSR GRTVYVADGL GGYDSALQLG LRTIVADAIV KGEVQVATTS
AGDPAAFARV QAGALDSDSA LSEAYARNNE GSYAEAAEFF EALAERDASG TSTDSHLPEY
LANQALQESN QRSFSTADAL FARAATPSAL ADPVVGRILR NSHALHYLNQ SKVQQAIAEL
NKPVVEIESS AVADARLSRG EISDEIAADL NREGSAMRQL GALDGQLQPF EKAQILDAQA
LQLRGVAYRI DGNFPKAKAA FAEAINAMQA IREGRMNSTG WLRASIQSEL GLIAEAEGNV
GEAERLYADA LQVVEIQHPN SAVSLGAKAR FAGFLSRHGQ TDRAATMYGQ VVSEAESLPG
AMASIRTLLR PYFRLLAARA ATDPTAVTRM FGASQVMLRP GIAQTQALLA RELSGGDDEA
ASLFRQSVTL SRYIARATGE IARMTATPNP AERPALAEAQ ARLARYSRDQ TALQAKLAQF
PRYRVLSPQT MSVEELQKAL RPGDGYYKVT LVGDDIYAMF VAQGVARAWK LDMTAKQLAD
VVAQIRDSVV KIENGQVATY PFDVVLARKL YVTLMGPVDA DMHKVTNLIF EPDGPLLQLP
ANLLPIDQAG VDAYLGRLKK PNADDFDFRG VNWLGRDRDI STVVSPRSFV DGRDVASSKA
IKAYLGLGEN ARPALNPLFV PPPAMADPCA WPLGNWNNPI SASELYLASG IIGADKSRLV
IDAAFSDSTI MGMSDLNEYR IIHFATHGLV TAPRPECPAR PALLTSFGGG TSDGLLSFKE
IFDLKLDADV VILSACDTAG MATVSATREA GITTGGNFAL DGLVRAFVGA GARTVIASHW
PVPDDYNATK RLISGLFTAP PGTPMATAMR QAQLGLMDDA NTSHPYYWSA FAIVGDGERP
LLPTGAAPGA AVQATR
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