| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3154 |
|---|
| Symbol | |
|---|
| ID | 5196129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3468262 |
|---|
| End bp | 3469434 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640582701 |
|---|
| Product | cystathionine gamma-synthase |
|---|
| Protein accession | YP_001263640 |
|---|
| Protein GI | 148556058 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.718731 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC GCGACGAAGG CGCGCCCCGT CCGCAGACGA TCTCGGCCGC GCATGGCGTC
GCGACCGACG CCGGCTTCGG CGCCGTCGCG CCGCCGCTCT ATCTGTCGAG CACCTATGCG
TTCGCCGGCT ACGACCAGCC GCGCCACTAT GATTACGGCC GCGCCGGCAA CCCGACGCGC
GACCTGCTCG CCGAGGCGCT GGCGAAGCTG GAAGGCGGCG CGGGCGCGAT CGTCACGTCG
AGCGGCATGG CCGCGCTCGA CCTGCTCGTC GGCCGGCTGC GCCCCGACGA CCTCGTCCTC
GCCCCGCACG ATTGCTATGG CGGGACGATG CGCCTGCTCA AGGCGCGCGC CGGGCGCGGC
CATTGCTCGG TGCGCTTCGT CGACCAGACC GACATGCGCG CCTTCGCCGG CGCGCTCGAC
GAGGTGCCGG CGCTGGTCCT GATCGAGACT CCGAGCAACC CGCTGATGCG GGTCGTCGAC
ATCGCCGCGC TCAGCGCCCT GGCGCGCGCG GCGGGGGCCG AGGTCGCGGT CGACAACACC
TTCCTGTCGC CGGCGATCCA GCGGCCGATC GCGCTGGGCG CCGATTATGC GATCCATTCG
ACCACCAAAT ATCTCAATGG CCATTCCGAC GTGATCGGCG GCGCGGTGGT GGCCGCCGAT
CCCGCGCAGG TCGAGGCGCT GCGCCACTGG GCCAACGTCG TCGGCAGCGC CGGCGCGCCG
TTCGATTCCT GGCTGACGCT GCGCGGGCTG CGCACCCTGT TCCCGCGGAT GGAGCAGCAG
CAGATCAACG CGATGGCGGT CGCCAACCAT CTCGAACGCC ATCCCGCCGT CGCGCGGGTC
CATTATCCGG GGCTCGCCTC GCACCCCGGC CACGCGATCG CCTCGCGCCA GCAGCGCGGC
TTCGGGGCGA TGCTGAGCTT CGAGCTGGCC GGCGGGGTCG CGGCGGTGCG CCGCTTCATC
GACGCGGTGC GCTTCTTCAC CCTCGCCGAA TCGCTGGGCG GGGTCGAGAG CCTGGTGGCG
CACCCGGCGA CGATGACCCA CGCCGACATG GGCGAGGAGG CGCGCGCGGC GGCGGGCATC
AGCGACAGCC TGCTGCGGCT GTCGGTCGGC CTCGAGGCCG AGCGCGACCT GATCGCCGGG
CTCGACAAGG GGCTGGCCGC ATGCCGCGCC TGA
|
|---|
| Protein sequence | MTDRDEGAPR PQTISAAHGV ATDAGFGAVA PPLYLSSTYA FAGYDQPRHY DYGRAGNPTR
DLLAEALAKL EGGAGAIVTS SGMAALDLLV GRLRPDDLVL APHDCYGGTM RLLKARAGRG
HCSVRFVDQT DMRAFAGALD EVPALVLIET PSNPLMRVVD IAALSALARA AGAEVAVDNT
FLSPAIQRPI ALGADYAIHS TTKYLNGHSD VIGGAVVAAD PAQVEALRHW ANVVGSAGAP
FDSWLTLRGL RTLFPRMEQQ QINAMAVANH LERHPAVARV HYPGLASHPG HAIASRQQRG
FGAMLSFELA GGVAAVRRFI DAVRFFTLAE SLGGVESLVA HPATMTHADM GEEARAAAGI
SDSLLRLSVG LEAERDLIAG LDKGLAACRA
|
|---|
| |